RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	FAM187A	A6NFU0	413 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	PIR	O00625	290 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	LRRN2	O75325	713 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	OAZ2	O95190	189 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	IL18RAP	O95256	599 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	DCN	P07585	359 aa	Known RBP	9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	KRT19	P08727	400 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	TYMP	P19971	482 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	AFM	P43652	599 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	ALDH1A3	P47895	512 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	TAF6	P49848	677 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	DNM1	Q05193	864 aa	Known RBP	9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	BFSP1	Q12934	665 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	SNW1	Q13573	536 aa	Known RBP	9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	ALCAM	Q13740	583 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	MGAT5B	Q3V5L5	792 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	SV2C	Q496J9	727 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	PRSS36	Q5K4E3	855 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	WSCD1	Q658N2	575 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	SCARA3	Q6AZY7	606 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	TANGO2	Q6ICL3	276 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	STXBP4	Q6ZWJ1	553 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	RTL10	Q7L3V2	364 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	NELFCD	Q8IXH7	590 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	GRAMD1C	Q8IYS0	662 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	IQUB	Q8NA54	791 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	OR10T2	Q8NGX3	314 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	ZNF560	Q96MR9	790 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	TSPAN18	Q96SJ8	248 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	SEPT5	Q99719	369 aa	Predicted RBP	9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	RTP3	Q9BQQ7	232 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	TRIM9	Q9C026	710 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	LRRC27	Q9C0I9	530 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	CUEDC2	Q9H467	287 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	PDE11A	Q9HCR9	933 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	SLC2A4RG	Q9NR83	387 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	FAM13B	Q9NYF5	915 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	PCDHA7	Q9UN72	937 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	AGAP1	Q9UPQ3	857 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	MYO16	Q9Y6X6	1858 aa		9.36	□□□□□ -0.91
RFX3-209	ENST00000451859	CFAP54	Q96N23	3096 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	9.35	□□□□□ -0.91
RFX3-209	ENST00000451859		A0A1W2PRU2	124 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	KPNA7	A9QM74	516 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	ZNF197	O14709	1029 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	EXTL3	O43909	919 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	LDHA	P00338	332 aa	Known RBP	9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	TMEM191B	P0C7N4	346 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	DMD	P11532	3685 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	CD72	P21854	359 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	GART	P22102	1010 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	CYP2J2	P51589	502 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	EPHB3	P54753	998 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	AMPD3	Q01432	767 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	GPR17	Q13304	367 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	PLD1	Q13393	1074 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	MYBPC2	Q14324	1141 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	TEAD2	Q15562	447 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	MLF2	Q15773	248 aa	Predicted RBP	9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	FAM78A	Q5JUQ0	283 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	FAM26F	Q5R3K3	315 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	RALGAPA1	Q6GYQ0	2036 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	CENPP	Q6IPU0	288 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	CBWD2	Q8IUF1	395 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	CCDC105	Q8IYK2	499 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	THEM5	Q8N1Q8	247 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	GPD1L	Q8N335	351 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	CSGALNACT2	Q8N6G5	542 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	DTWD2	Q8NBA8	298 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	SHKBP1	Q8TBC3	707 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	KCNG4	Q8TDN1	519 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	ZSWIM3	Q96MP5	696 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	LPIN3	Q9BQK8	851 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	PRR14	Q9BWN1	585 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	MTMR12	Q9C0I1	747 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	TMEM206	Q9H813	350 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	ZNF334	Q9HCZ1	680 aa	Predicted RBP	9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	KBTBD4	Q9NVX7	518 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	ABI2	Q9NYB9	513 aa	Predicted RBP	9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	GDE1	Q9NZC3	331 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	DSE	Q9UL01	958 aa		9.35	□□□□□ -0.91
RFX3-209	ENST00000451859	PTPRJ	Q12913	1337 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	CLIC2	O15247	247 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	MOSPD3	O75425	235 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	ECI2	O75521	394 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	CLSTN1	O94985	981 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	S1PR4	O95977	384 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	FCAR	P24071	287 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	ACAT1	P24752	427 aa	Known RBP	9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	HOXD13	P35453	343 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	VIPR2	P41587	438 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	CUL4B	Q13620	913 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	UBXN2B	Q14CS0	331 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	ANGPT1	Q15389	498 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	TAF12	Q16514	161 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	CCDC142	Q17RM4	750 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	STXBP5	Q5T5C0	1151 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	RESP18	Q5W5W9	173 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	TPRG1	Q6ZUI0	275 aa		9.34	□□□□□ -0.91
RFX3-209	ENST00000451859	NT5DC4	Q86YG4	428 aa		9.34	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms