RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CBWD5Q5RIA9 395 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 RAB44Q7Z6P3 723 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 REXO1L1PQ8IX06 675 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 GPR20Q99678 358 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 TRIM56Q9BRZ2 755 aaKnown RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 RSAD1Q9HA92 442 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 ZNF214Q9UL59 606 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 BARX2Q9UMQ3 279 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 DUSP10Q9Y6W6 482 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 MORC2Q9Y6X9 1032 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 TBKBP1A7MCY6 615 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 ZNF449Q6P9G9 518 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 NT5DC4Q86YG4 428 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 MTMR8Q96EF0 704 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 MAF1Q9H063 256 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 DDX43Q9NXZ2 648 aaKnown RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 ASTN1O14525 1302 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 NUP98P52948 1817 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 NUP188Q5SRE5 1749 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 M0QYT0 321 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 TTI1O43156 1089 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 CST8O60676 142 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 GJB1P08034 283 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 ELNP15502 786 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 KCNA2P16389 499 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 CA4P22748 312 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 RRM1P23921 792 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 NDST1P52848 882 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 GCNT1Q02742 428 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 ARSHQ5FYA8 562 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 MDH1BQ5I0G3 518 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 ZBED8Q8IZ13 594 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 ARHGAP18Q8N392 663 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 DPF3Q92784 378 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 VPS39Q96JC1 886 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 TRPV6Q9H1D0 765 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 KRT82Q9NSB4 513 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 DDIT4Q9NX09 232 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 TNFSF13BQ9Y275 285 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 ANGPTL3Q9Y5C1 460 aa7.77□□□□□ -1.16
SYNE1-213ENST00000448038 LRG1P02750 347 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 MX2P20592 715 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 MRPS6P82932 125 aaKnown RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 YAF2Q8IY57 180 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 HDAC11Q96DB2 347 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 GAD1Q99259 594 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 MAGEB5Q9BZ81 275 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 AIPL1Q9NZN9 384 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 FARP1Q9Y4F1 1045 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 STRCQ7RTU9 1775 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 SOWAHBA6NEL2 793 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 TADA3O75528 432 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 URODP06132 367 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 CDH8P55286 799 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 MAP3K7CLP57077 242 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 DLG4P78352 724 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 CNTNAP1P78357 1384 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 RAD51Q06609 339 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 ZKSCAN8Q15776 578 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 BOLA3Q53S33 107 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 ZNF280DQ6N043 979 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 TRIM42Q8IWZ5 723 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 DCLK2Q8N568 766 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 ACSF2Q96CM8 615 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 FAM118BQ9BPY3 351 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 IGLV3-22A0A075B6J6 115 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 NEMP1O14524 444 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 ZNF189O75820 626 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 LSM8O95777 96 aaKnown RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 PTENP60484 403 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 JAG1P78504 1218 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 YWHAHQ04917 246 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 PPP3CAQ08209 521 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 ELAVL2Q12926 359 aaKnown RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 OVOS1Q6IE37 1185 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 SYDE1Q6ZW31 735 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 ABRAQ8N0Z2 381 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 ATPAF2Q8N5M1 289 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 SPATA18Q8TC71 538 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 ZNF606Q8WXB4 792 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 ARHGEF2Q92974 986 aaKnown RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 STMN2Q93045 179 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 ATP6V1E2Q96A05 226 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 CELF4Q9BZC1 486 aaKnown RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 RBM12Q9NTZ6 932 aaKnown RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 STK25O00506 426 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 ADRB2P07550 413 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 NR1D1P20393 614 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 HARS2P49590 506 aaKnown RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 RTP1P59025 263 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 BYSLQ13895 437 aaKnown RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 LRRC55Q6ZSA7 311 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 MYLK4Q86YV6 388 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 REM2Q8IYK8 340 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 MAML3Q96JK9 1138 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 AGAP3Q96P47 875 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 ACO2Q99798 780 aaKnown RBP7.77□□□□□ -1.17
SYNE1-213ENST00000448038 SYT15Q9BQS2 421 aa7.77□□□□□ -1.17
SYNE1-213ENST00000448038 TRIM51Q9BSJ1 452 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms