RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 C2orf71A6NGG8 1288 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 hCG_1984214I3L0E3 225 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 CLASP2O75122 1294 aaKnown RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 EIF3JO75822 258 aaKnown RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 TSPAN15O95858 294 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 CEACAM5P06731 702 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 PDIA4P13667 645 aaKnown RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 LIG1P18858 919 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 GBP2P32456 591 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 MCM4P33991 863 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 CNR2P34972 360 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 KRT2P35908 639 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 RPS9P46781 194 aaKnown RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 TOB1P50616 345 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 NAPAP54920 295 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 ZNF252P-AS1Q0IIN9 211 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 TRIM29Q14134 588 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 GIT2Q14161 759 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 SIM2Q14190 667 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 UBXN2BQ14CS0 331 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 UBE2SQ16763 222 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 USH1GQ495M9 461 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 CYP27C1Q4G0S4 372 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 FBXO47Q5MNV8 452 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 ZBTB41Q5SVQ8 909 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 STPG1Q5TH74 334 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 TMC5Q6UXY8 1006 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 PPFIBP1Q86W92 1011 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 NOSTRINQ8IVI9 506 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 BLIDQ8IZY5 108 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 C12orf76Q8N812 135 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 ZNF713Q8N859 430 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 BHLHE22Q8NFJ8 381 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 CCDC148Q8NFR7 591 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 NSUN6Q8TEA1 469 aaKnown RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 CLEC4DQ8WXI8 215 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 TBC1D5Q92609 795 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 PGBD1Q96JS3 809 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 SPATA33Q96N06 139 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 USP28Q96RU2 1077 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 HNRNPABQ99729 332 aaKnown RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 C16orf70Q9BSU1 422 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 DDX23Q9BUQ8 820 aaKnown RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 AMNQ9BXJ7 453 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 FOXP1Q9H334 677 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 ZSCAN16Q9H4T2 348 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 BCAS3Q9H6U6 928 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 PRMT8Q9NR22 394 aaPredicted RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 EPS15L1Q9UBC2 864 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 SEC63Q9UGP8 760 aaKnown RBP5.34□□□□□ -1.55
PTPN4-206ENST00000441089 PCDHA6Q9UN73 950 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 PCDHA4Q9UN74 947 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 PCDHB7Q9Y5E2 793 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 PCDHA8Q9Y5H6 950 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 PCDHA1Q9Y5I3 950 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 CLIC4Q9Y696 253 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 DOCK5Q9H7D0 1870 aa5.34□□□□□ -1.55
PTPN4-206ENST00000441089 ATMQ13315 3056 aa5.34□□□□□ -1.56
PTPN4-206ENST00000441089 AHCTF1Q8WYP5 2266 aa5.34□□□□□ -1.56
PTPN4-206ENST00000441089 NUP205Q92621 2012 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 EVPLQ92817 2033 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 TBKBP1A7MCY6 615 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 MEIS2O14770 477 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 FIBPO43427 364 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 LRRN2O75325 713 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 ZNF806P0C7X5 589 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 XBP1P17861 261 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 CA8P35219 290 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 SARSP49591 514 aaKnown RBP5.33□□□□□ -1.56
PTPN4-206ENST00000441089 GATMP50440 423 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 NOVA1P51513 510 aaKnown RBP5.33□□□□□ -1.56
PTPN4-206ENST00000441089 ADCY7P51828 1080 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 PTPAQ15257 358 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 IFI16Q16666 785 aaKnown RBP5.33□□□□□ -1.56
PTPN4-206ENST00000441089 HSDL1Q3SXM5 330 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 CELF3Q5SZQ8 465 aaKnown RBP5.33□□□□□ -1.56
PTPN4-206ENST00000441089 JAKMIP3Q5VZ66 844 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 USP17L6PQ6QN14 398 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 CYP26C1Q6V0L0 522 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 PIK3AP1Q6ZUJ8 805 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 BRAPQ7Z569 592 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 RTN4RL1Q86UN2 441 aaPredicted RBP5.33□□□□□ -1.56
PTPN4-206ENST00000441089 PROSER1Q86XN7 944 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 FAM177A1Q8N128 213 aaPredicted RBP5.33□□□□□ -1.56
PTPN4-206ENST00000441089 RSAD2Q8WXG1 361 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 LINC01599Q8WXQ3 324 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 CLDN23Q96B33 292 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 HEXIM2Q96MH2 286 aaKnown RBP5.33□□□□□ -1.56
PTPN4-206ENST00000441089 ZNF558Q96NG5 402 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 FANCD2OSQ96PS1 177 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 IER2Q9BTL4 223 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 DUSP23Q9BVJ7 150 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 SCNM1Q9BWG6 230 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 CCDC86Q9H6F5 360 aaKnown RBP5.33□□□□□ -1.56
PTPN4-206ENST00000441089 RIC8AQ9NPQ8 531 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 DISC1Q9NRI5 854 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 LMBRD1Q9NUN5 540 aa5.33□□□□□ -1.56
PTPN4-206ENST00000441089 TYW1Q9NV66 732 aaKnown RBP5.33□□□□□ -1.56
PTPN4-206ENST00000441089 SETD4Q9NVD3 440 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms