RNA–Protein interactions for RNA: ENST00000439724.7

SMAD3-202, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,530 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-202ENST00000439724 DDX42Q86XP3 938 aaKnown RBP eCLIP12.47□□□□□ -0.41
SMAD3-202ENST00000439724 LRRC52Q8N7C0 313 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 NIPA2Q8N8Q9 360 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 TRPV1Q8NER1 839 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 BEST2Q8NFU1 509 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 EXD1Q8NHP7 514 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 PPP1R13LQ8WUF5 828 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 TMEM40Q8WWA1 233 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 SLCO2A1Q92959 643 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 C18orf8Q96DM3 657 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 ZMAT2Q96NC0 199 aaKnown RBP12.47□□□□□ -0.41
SMAD3-202ENST00000439724 SH3GL2Q99962 352 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 UPF3AQ9H1J1 476 aaKnown RBP12.47□□□□□ -0.41
SMAD3-202ENST00000439724 NEUROG2Q9H2A3 272 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 WDR35Q9P2L0 1181 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 KIAA1257Q9ULG3 409 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 CASP8AP2Q9UKL3 1982 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 O00370 1275 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 OPA1O60313 960 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 RECQL4O94761 1208 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 MICAL2O94851 1124 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 GJB6O95452 261 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 HMGCRP04035 888 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 ZNF200P98182 395 aaPredicted RBP12.47□□□□□ -0.41
SMAD3-202ENST00000439724 CNGA2Q16280 664 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 SGO2Q562F6 1265 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 XKR4Q5GH76 650 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 MFSD14CQ5VZR4 134 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 TAF2Q6P1X5 1199 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 TTC27Q6P3X3 843 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 DCUN1D2Q6PH85 259 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 CCDC137Q6PK04 289 aaKnown RBP12.47□□□□□ -0.41
SMAD3-202ENST00000439724 IQCKQ8N0W5 287 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 C7orf31Q8N865 590 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 FNIP1Q8TF40 1166 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 LRRC45Q96CN5 670 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 MCEEQ96PE7 176 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 MTG1Q9BT17 334 aaPredicted RBP12.47□□□□□ -0.41
SMAD3-202ENST00000439724 TRIM6Q9C030 488 aaPredicted RBP12.47□□□□□ -0.41
SMAD3-202ENST00000439724 NXF3Q9H4D5 531 aaKnown RBP12.47□□□□□ -0.41
SMAD3-202ENST00000439724 CYTH4Q9UIA0 394 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 UBQLN1Q9UMX0 589 aaKnown RBP12.47□□□□□ -0.41
SMAD3-202ENST00000439724 PIN4Q9Y237 131 aaKnown RBP12.47□□□□□ -0.41
SMAD3-202ENST00000439724 FAN1Q9Y2M0 1017 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 SCN1AP35498 2009 aa12.47□□□□□ -0.41
SMAD3-202ENST00000439724 SIGLEC16A6NMB1 481 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 RNF40O75150 1001 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 GABRB2P47870 512 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 NDST1P52848 882 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 OGDHQ02218 1023 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 KLF1Q13351 362 aaPredicted RBP12.46□□□□□ -0.42
SMAD3-202ENST00000439724 ZNF268Q14587 947 aaPredicted RBP12.46□□□□□ -0.42
SMAD3-202ENST00000439724 STILQ15468 1287 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 UBXN11Q5T124 520 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 CFAP58Q5T655 872 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 CYP4A22Q5TCH4 519 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 NT5C1AQ9BXI3 368 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 FAM129AQ9BZQ8 928 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 CXCL16Q9H2A7 254 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 DPH5Q9H2P9 285 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 PRDM10Q9NQV6 1147 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 VPS18Q9P253 973 aa12.46□□□□□ -0.42
SMAD3-202ENST00000439724 MYADML2A6NDP7 307 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 M0QYV0 167 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 XPOTO43592 962 aaKnown RBP12.45□□□□□ -0.42
SMAD3-202ENST00000439724 ALDH1A1P00352 501 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 CD4P01730 458 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 C6orf222P0C671 652 aaPredicted RBP12.45□□□□□ -0.42
SMAD3-202ENST00000439724 KCNE1P15382 129 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 ATF7P17544 494 aaPredicted RBP12.45□□□□□ -0.42
SMAD3-202ENST00000439724 CETN2P41208 172 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 GPD2P43304 727 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 PSMC4P43686 418 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 ORC1Q13415 861 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 MTMR3Q13615 1198 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 SPDYCQ5MJ68 293 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 DAB2IPQ5VWQ8 1189 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 C9orf57Q5W0N0 161 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 XYLT1Q86Y38 959 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 RCOR2Q8IZ40 523 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 PIK3R5Q8WYR1 880 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 TRIB2Q92519 343 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 EXOC4Q96A65 974 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 RBM41Q96IZ5 413 aaKnown RBP12.45□□□□□ -0.42
SMAD3-202ENST00000439724 HEXIM2Q96MH2 286 aaKnown RBP12.45□□□□□ -0.42
SMAD3-202ENST00000439724 ZIM3Q96PE6 472 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 CPXM1Q96SM3 734 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 RUFY1Q96T51 708 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 HOMER3Q9NSC5 361 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 ZDHHC18Q9NUE0 388 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 TUBGCP4Q9UGJ1 667 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 PARP2Q9UGN5 583 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 ABT1Q9ULW3 272 aaKnown RBP12.45□□□□□ -0.42
SMAD3-202ENST00000439724 USTQ9Y2C2 406 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 HES2Q9Y543 173 aa12.45□□□□□ -0.42
SMAD3-202ENST00000439724 GOLGA8KD6RF30 607 aa12.44□□□□□ -0.42
SMAD3-202ENST00000439724 PPEF2O14830 753 aa12.44□□□□□ -0.42
SMAD3-202ENST00000439724 ECEL1O95672 775 aa12.44□□□□□ -0.42
SMAD3-202ENST00000439724 ERBB2P04626 1255 aa12.44□□□□□ -0.42
SMAD3-202ENST00000439724 KRT3P12035 628 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms