RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 RHOBTB3O94955 611 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 PABPC1P11940 636 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 MAPRE1Q15691 268 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 KYAT3Q6YP21 454 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 BBS2Q9BXC9 721 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 TMCC3Q9ULS5 477 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 DRG1Q9Y295 367 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 SPDYE2BA6NHP3 402 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 E5RI56 91 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 TEX46H3BTG2 121 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 APOL1O14791 398 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 SPDYE6P0CI01 402 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 DRG2P55039 364 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 ADCY1Q08828 1119 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 KCNH2Q12809 1159 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 KCNT1Q5JUK3 1230 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 KIAA0408Q6ZU52 694 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 KRT28Q7Z3Y7 464 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 NET1Q7Z628 596 aaPredicted RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 SFR1Q86XK3 245 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 E2F7Q96AV8 911 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 GPCPD1Q9NPB8 672 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 GTF3C4Q9UKN8 822 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 ZBTB1Q9Y2K1 713 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 LRRC53A6NM62 1247 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 SLCO1A2P46721 670 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 PLA2G4AP47712 749 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 ZBED8Q8IZ13 594 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 MED15Q96RN5 788 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 TRMT6Q9UJA5 497 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 MAGI2Q86UL8 1455 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 K7ERI5 159 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 IMPDH2P12268 514 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 PRAMEP78395 509 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 PPIL2Q13356 520 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 PRMT1Q99873 361 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 CCND2P30279 289 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 GJA8P48165 433 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 RDM1Q8NG50 284 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 FUT8Q9BYC5 575 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 RMI1Q9H9A7 625 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 REM1O75628 298 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 RXRAP19793 462 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 RPL3P39023 403 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 HPCAP84074 193 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 BOLA3Q53S33 107 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 PDZK1Q5T2W1 519 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 EXOC3L1Q86VI1 746 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 EZH1Q92800 747 aaPredicted RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 MAD2L2Q9UI95 211 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 HERC5Q9UII4 1024 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 SNX24Q9Y343 169 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 SPDYE16A6NNV3 312 aaPredicted RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 NBPF26B4DH59 902 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 CD2BP2O95400 341 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 ITKQ08881 620 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 SPDYE2Q495Y8 402 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 SYCE2Q6PIF2 218 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 CCDC24Q8N4L8 307 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 NBPF15Q8N660 670 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 ACMSDQ8TDX5 336 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 LENG1Q96BZ8 264 aaPredicted RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 GCNAQ96QF7 691 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 MMS19Q96T76 1030 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 THTPAQ9BU02 230 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 RPF1Q9H9Y2 349 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 SH3BP4Q9P0V3 963 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 ZC3H7BQ9UGR2 993 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 GUCA1CO95843 209 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 PCNAP12004 261 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 ERCC2P18074 760 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 GP5P40197 560 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 PHKA2P46019 1235 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 GNA13Q14344 377 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 MARK2Q7KZI7 788 aaKnown RBP7.48□□□□□ -1.21
VPS53-204ENST00000437048 MCUQ8NE86 351 aa7.48□□□□□ -1.21
VPS53-204ENST00000437048 PALLDQ8WX93 1383 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 PLK4O00444 970 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SOAT2O75908 522 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 ERP29P30040 261 aaKnown RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 TBL3Q12788 808 aaKnown RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 PLEKHA7Q6IQ23 1121 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 OSBPL11Q9BXB4 747 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SERPINB13Q9UIV8 391 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 KCNJ14Q9UNX9 436 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 A0A0B4J269 797 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 RECQL5O94762 991 aaPredicted RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 PRKAA1Q13131 559 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 TUBB3Q13509 450 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 PLS1Q14651 629 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 ARCQ7LC44 396 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 RNASE11Q8TAA1 199 aaKnown RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 NEU2Q9Y3R4 380 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 UBE2QL1A1L167 161 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 RNF103O00237 685 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 TOM1O60784 492 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 VPS72Q15906 364 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 CCDC142Q17RM4 750 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 PEG10Q86TG7 708 aaKnown RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 RBM46Q8TBY0 533 aaKnown RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms