RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 ACBD6Q9BR61 282 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 NUP62CLQ9H1M0 184 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 CLSTN2Q9H4D0 955 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 LMBRD1Q9NUN5 540 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 YIPF1Q9Y548 306 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 CUL9Q8IWT3 2517 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 TRIM49BA6NDI0 452 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 FAM163BP0C2L3 166 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 TRIM49P0CI25 452 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 TRIM49CP0CI26 452 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 P4HA1P13674 534 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 ALADP13716 330 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 PTPN2P17706 415 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 FSHRP23945 695 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 PIK3CAP42336 1068 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 ALDH1A3P47895 512 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 PMS1P54277 932 aaKnown RBP12.27□□□□□ -0.45
COL28A1-203ENST00000435823 EPHB3P54753 998 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 DUSP4Q13115 394 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 NFE2Q16621 373 aaPredicted RBP12.27□□□□□ -0.45
COL28A1-203ENST00000435823 SGSM1Q2NKQ1 1148 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 PABPC1LQ4VXU2 614 aaKnown RBP12.27□□□□□ -0.45
COL28A1-203ENST00000435823 ZNF667Q5HYK9 610 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 SV2AQ7L0J3 742 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 GET4Q7L5D6 327 aaPredicted RBP12.27□□□□□ -0.45
COL28A1-203ENST00000435823 ZDHHC14Q8IZN3 488 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 SPPL2BQ8TCT7 592 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 NELFBQ8WX92 580 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 MARVELD3Q96A59 401 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 EEF2KMTQ96G04 330 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 ZNF512Q96ME7 567 aaPredicted RBP12.27□□□□□ -0.45
COL28A1-203ENST00000435823 IMPG2Q9BZV3 1241 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 SNX25Q9H3E2 840 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 MMRN2Q9H8L6 949 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 HSFX1Q9UBD0 423 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 NXF1Q9UBU9 619 aaKnown RBP12.27□□□□□ -0.45
COL28A1-203ENST00000435823 CTNND2Q9UQB3 1225 aa12.27□□□□□ -0.45
COL28A1-203ENST00000435823 BDP1A6H8Y1 2624 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 PPP1R3GB7ZBB8 358 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 GABRDO14764 452 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 DCXO43602 365 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 TACC1O75410 805 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 BMP6P22004 513 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 WARSP23381 471 aaKnown RBP12.26□□□□□ -0.45
COL28A1-203ENST00000435823 ACAT1P24752 427 aaKnown RBP12.26□□□□□ -0.45
COL28A1-203ENST00000435823 GTF2H1P32780 548 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 GCLMP48507 274 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 TUFMP49411 452 aaKnown RBP12.26□□□□□ -0.45
COL28A1-203ENST00000435823 NTHL1P78549 312 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 PAK1Q13153 545 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 VEPH1Q14D04 833 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 MGAT5BQ3V5L5 792 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 DCAF17Q5H9S7 520 aaPredicted RBP12.26□□□□□ -0.45
COL28A1-203ENST00000435823 INTS6LQ5JSJ4 861 aaKnown RBP12.26□□□□□ -0.45
COL28A1-203ENST00000435823 CYP4A22Q5TCH4 519 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 TCERG1LQ5VWI1 586 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 FOXR2Q6PJQ5 311 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 LIMS2Q7Z4I7 341 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 OSTM1Q86WC4 334 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 ZC3H3Q8IXZ2 948 aaKnown RBP12.26□□□□□ -0.45
COL28A1-203ENST00000435823 ATAD1Q8NBU5 361 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 CCDC150Q8NCX0 1101 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 OR6B3Q8NGW1 331 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 KBTBD7Q8WVZ9 684 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 TAF4BQ92750 862 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 CEP63Q96MT8 703 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 SEPT5Q99719 369 aaPredicted RBP12.26□□□□□ -0.45
COL28A1-203ENST00000435823 SYT15Q9BQS2 421 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 CORO1BQ9BR76 489 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 XYLT2Q9H1B5 865 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 VRTNQ9H8Y1 702 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 METTL14Q9HCE5 456 aaKnown RBP12.26□□□□□ -0.45
COL28A1-203ENST00000435823 TMEM8AQ9HCN3 771 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 ABI2Q9NYB9 513 aaPredicted RBP12.26□□□□□ -0.45
COL28A1-203ENST00000435823 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.26□□□□□ -0.45
COL28A1-203ENST00000435823 DNMT3BQ9UBC3 853 aaKnown RBP12.26□□□□□ -0.45
COL28A1-203ENST00000435823 CDH9Q9ULB4 789 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 SLC27A5Q9Y2P5 690 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 PCDHB5Q9Y5E4 795 aa12.26□□□□□ -0.45
COL28A1-203ENST00000435823 ZNF197O14709 1029 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 VNN1O95497 513 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 VNN2O95498 520 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 HLA-DRAP01903 254 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 RHOP08100 348 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 GNL1P36915 607 aaPredicted RBP12.25□□□□□ -0.45
COL28A1-203ENST00000435823 MXI1P50539 228 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 PPP3CAQ08209 521 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 MAPRE1Q15691 268 aaKnown RBP12.25□□□□□ -0.45
COL28A1-203ENST00000435823 CCDC40Q4G0X9 1142 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 C1orf220Q5T0J3 134 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 KRT39Q6A163 491 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 PDZD4Q76G19 769 aaPredicted RBP12.25□□□□□ -0.45
COL28A1-203ENST00000435823 FILIP1Q7Z7B0 1213 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 ITIH5Q86UX2 942 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 LRRTM3Q86VH5 581 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 LEMD2Q8NC56 503 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 FAM200AQ8TCP9 573 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 CRISPLD1Q9H336 500 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 HCFC1R1Q9NWW0 138 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 ARMCX3Q9UH62 379 aaPredicted RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms