RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CCHCR1Q8TD31 782 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 IPCEF1Q8WWN9 437 aaPredicted RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 TRIM43Q96BQ3 446 aaPredicted RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 SLC7A6OSQ96CW6 309 aaPredicted RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 IQCDQ96DY2 449 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 TMEM120AQ9BXJ8 343 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 KATNBL1Q9H079 304 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 TLR9Q9NR96 1032 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 SIRT5Q9NXA8 310 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 COL20A1Q9P218 1284 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 SWAP70Q9UH65 585 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 CDC23Q9UJX2 597 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 MAGED2Q9UNF1 606 aaPredicted RBP4.8□□□□□ -1.64
HMGB3-203ENST00000430118 NFAT5O94916 1531 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 PKD1L3Q7Z443 1732 aa4.8□□□□□ -1.64
HMGB3-203ENST00000430118 KCPQ6ZWJ8 1503 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 MBD3L4A6NDZ8 208 aaPredicted RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 MBD3L3A6NE82 208 aaPredicted RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 PRRT4C9JH25 899 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 F2RL2O00254 374 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 SYT5O00445 386 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 AREL1O15033 823 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 THAP12O43422 761 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 SEMA7AO75326 666 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 ITGA10O75578 1167 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 KLHL18O94889 574 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 CNOT4O95628 575 aaKnown RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 JUNP05412 331 aaKnown RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 GNAI3P08754 354 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 ATF2P15336 505 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 FGFR2P21802 821 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 ADCY8P40145 1251 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 CASP2P42575 452 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 ALDH9A1P49189 494 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 CTCFP49711 727 aaPredicted RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 MEOX1P50221 254 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 SOX8P57073 446 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 GNAI1P63096 354 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 HTRA4P83105 476 aaPredicted RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 SRSF3P84103 164 aaKnown RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 DUSP2Q05923 314 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 TBX2Q13207 712 aaPredicted RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 SMAD4Q13485 552 aaKnown RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 RAB32Q13637 225 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 RTP5Q14D33 572 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 ZACNQ401N2 412 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 PABPC1LQ4VXU2 614 aaKnown RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 OTUD7BQ6GQQ9 843 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 PPP1R3BQ86XI6 285 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 CACNA2D3Q8IZS8 1091 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 ZGPATQ8N5A5 531 aaKnown RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 MYCT1Q8N699 235 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 LILRA3Q8N6C8 439 aaPredicted RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 IL17RDQ8NFM7 739 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 ZNF384Q8TF68 577 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 RMDN3Q96TC7 470 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 ZNF518BQ9C0D4 1074 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 MSL2Q9HCI7 577 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 TMEM8AQ9HCN3 771 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 CPNE7Q9UBL6 633 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 CPA4Q9UI42 421 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 AJAP1Q9UKB5 411 aaPredicted RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 PLA2G2DQ9UNK4 145 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 GPR52Q9Y2T5 361 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 CTDP1Q9Y5B0 961 aaPredicted RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 PCDHGB2Q9Y5G2 931 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 LRRFIP2Q9Y608 721 aaKnown RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 KIAA1210Q9ULL0 1709 aa4.79□□□□□ -1.64
HMGB3-203ENST00000430118 SMG6Q86US8 1419 aaKnown RBP4.79□□□□□ -1.64
HMGB3-203ENST00000430118 CGNL1Q0VF96 1302 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 CENPJQ9HC77 1338 aaPredicted RBP4.78□□□□□ -1.64
HMGB3-203ENST00000430118 USP54Q70EL1 1684 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 TEX51A0A1B0GUA7 166 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 A0A1B0GVC2 190 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 F8W8V4 182 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 SLC26A4O43511 780 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 ANXA1P04083 346 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 MTHFD1P11586 935 aaKnown RBP4.78□□□□□ -1.64
HMGB3-203ENST00000430118 MYL4P12829 197 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 DEKP35659 375 aaKnown RBP4.78□□□□□ -1.64
HMGB3-203ENST00000430118 FLT3LGP49771 235 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 ARL4CP56559 192 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 MXRA7P84157 204 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 CAP1Q01518 475 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 CNGB1Q14028 1251 aaPredicted RBP4.78□□□□□ -1.64
HMGB3-203ENST00000430118 KIF22Q14807 665 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 KCNMB1Q16558 191 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 PRR31Q5SQ13 230 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 FKBP15Q5T1M5 1219 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 FYB2Q5VWT5 728 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 CIAPIN1Q6FI81 312 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 CBLL1Q75N03 491 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 PDSS2Q86YH6 399 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 LIX1LQ8IVB5 337 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 RTKN2Q8IZC4 609 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 SH2D3CQ8N5H7 860 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 GCDHQ92947 438 aaPredicted RBP4.78□□□□□ -1.64
HMGB3-203ENST00000430118 ZNF566Q969W8 418 aa4.78□□□□□ -1.64
HMGB3-203ENST00000430118 SNX22Q96L94 193 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms