RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 SESTD1Q86VW0 696 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 COLGALT2Q8IYK4 626 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 POC1BQ8TC44 478 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 PROKR1Q8TCW9 393 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 PARD3BQ8TEW8 1205 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 SNX19Q92543 992 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 PHKBQ93100 1093 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 LENG9Q96B70 501 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 BOD1Q96IK1 185 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 ZNF747Q9BV97 191 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 SPATA5L1Q9BVQ7 753 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 ANKFY1Q9P2R3 1169 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 XPR1Q9UBH6 696 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 HESX1Q9UBX0 185 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 MYRFQ9Y2G1 1151 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 RAD54BQ9Y620 910 aa5.1□□□□□ -1.59
USP40-204ENST00000427947 TRGV11A0A075B6L2 103 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 MYADML2A6NDP7 307 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 TMEM233B4DJY2 109 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 E7ENX8 843 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 NPIPB8E9PQR5 432 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 DCLK1O15075 740 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 KPNA5O15131 536 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 MATN3O15232 486 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 RPL17P18621 184 aaKnown RBP5.09□□□□□ -1.59
USP40-204ENST00000427947 ITGALP20701 1170 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 PIK3CBP42338 1070 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 NPTX2P47972 431 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 GCLCP48506 637 aaPredicted RBP5.09□□□□□ -1.59
USP40-204ENST00000427947 VAV2P52735 878 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 RPS16P62249 146 aaKnown RBP5.09□□□□□ -1.59
USP40-204ENST00000427947 TAP2Q03519 686 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 IFIT5Q13325 482 aaKnown RBP5.09□□□□□ -1.59
USP40-204ENST00000427947 DYRK1AQ13627 763 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 IQCB1Q15051 598 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 ZXDCQ2QGD7 858 aaPredicted RBP5.09□□□□□ -1.59
USP40-204ENST00000427947 SYCP2LQ5T4T6 812 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 RHOUQ7L0Q8 258 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 MICU3Q86XE3 530 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 ADGRG5Q8IZF4 528 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 NMD3Q96D46 503 aaKnown RBP5.09□□□□□ -1.59
USP40-204ENST00000427947 HEPHQ9BQS7 1158 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 MLST8Q9BVC4 326 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 NAA15Q9BXJ9 866 aaKnown RBP5.09□□□□□ -1.59
USP40-204ENST00000427947 ZNF518BQ9C0D4 1074 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 MMRN2Q9H8L6 949 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 UNKLQ9H9P5 680 aaKnown RBP5.09□□□□□ -1.59
USP40-204ENST00000427947 CHST12Q9NRB3 414 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 TMEM74BQ9NUR3 256 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 COL20A1Q9P218 1284 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 DKK2Q9UBU2 259 aa5.09□□□□□ -1.59
USP40-204ENST00000427947 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.09□□□□□ -1.59
USP40-204ENST00000427947 TRIM43BA6NCK2 446 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 ZNF202O95125 648 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 ATXN1LP0C7T5 689 aaKnown RBP5.08□□□□□ -1.6
USP40-204ENST00000427947 VIPR2P41587 438 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 NDUFV1P49821 464 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 ZNF134P52741 427 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 LILRA4P59901 499 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 HLXQ14774 488 aaPredicted RBP5.08□□□□□ -1.6
USP40-204ENST00000427947 LONRF1Q17RB8 773 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 LY6G5CQ5SRR4 150 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 DCAF12L1Q5VU92 463 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 IGFL4Q6B9Z1 124 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 LAYNQ6UX15 382 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 TMEM108Q6UXF1 575 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 MICALCLQ6ZW33 695 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 TMPRSS9Q7Z410 1059 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 C11orf96Q7Z7L8 435 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 MRGPREQ86SM8 312 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 ARHGEF19Q8IW93 802 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 RAPGEF4Q8WZA2 1011 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 TRIM43Q96BQ3 446 aaPredicted RBP5.08□□□□□ -1.6
USP40-204ENST00000427947 MOGAT1Q96PD6 335 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 TBCBQ99426 244 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 STK31Q9BXU1 1019 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 MS4A7Q9GZW8 240 aaPredicted RBP5.08□□□□□ -1.6
USP40-204ENST00000427947 PNPLA8Q9NP80 782 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 INTS13Q9NVM9 706 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 TESQ9UGI8 421 aaKnown RBP5.08□□□□□ -1.6
USP40-204ENST00000427947 PAXBP1Q9Y5B6 917 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 HS3ST4Q9Y661 456 aa5.08□□□□□ -1.6
USP40-204ENST00000427947 F5H697 171 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 F8W8V4 182 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 PYCARD-AS1I3L0S3 204 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 FOXN3O00409 490 aaPredicted RBP5.07□□□□□ -1.6
USP40-204ENST00000427947 SOAT2O75908 522 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 ITGAMP11215 1152 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 TNFRSF1AP19438 455 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 MAKP20794 623 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 GATA3P23771 443 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 PXNP49023 591 aaPredicted RBP5.07□□□□□ -1.6
USP40-204ENST00000427947 PRIM2P49643 509 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 LOXL3P58215 753 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 HDAC1Q13547 482 aaPredicted RBP5.07□□□□□ -1.6
USP40-204ENST00000427947 SP5Q6BEB4 398 aaPredicted RBP5.07□□□□□ -1.6
USP40-204ENST00000427947 GPR149Q86SP6 731 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 LIX1LQ8IVB5 337 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 FAM9AQ8IZU1 332 aaPredicted RBP5.07□□□□□ -1.6
USP40-204ENST00000427947 OR56A3Q8NH54 315 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms