RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 DYDC1Q8WWB3 177 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 HHIPL1Q96JK4 782 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 STMN4Q9H169 189 aaPredicted RBP11.3□□□□□ -0.6
CUX1-205ENST00000425244 SMARCAD1Q9H4L7 1026 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 WHRNQ9P202 907 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 CTNNAL1Q9UBT7 734 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 ANAPC5Q9UJX4 755 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 GJD2Q9UKL4 321 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 SH3BP1Q9Y3L3 701 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 NUB1Q9Y5A7 615 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 TLR3O15455 904 aaKnown RBP11.3□□□□□ -0.6
CUX1-205ENST00000425244 EDN1P05305 212 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 ACO1P21399 889 aaKnown RBP11.3□□□□□ -0.6
CUX1-205ENST00000425244 HNRNPH1P31943 449 aaKnown RBP11.3□□□□□ -0.6
CUX1-205ENST00000425244 FCGRTP55899 365 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 ACTN3Q08043 901 aaPredicted RBP11.3□□□□□ -0.6
CUX1-205ENST00000425244 MAMLD1Q13495 774 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 DUSP28Q4G0W2 176 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 ZNF394Q53GI3 561 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 ZNF365Q70YC5 407 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 TRMT10CQ7L0Y3 403 aaKnown RBP11.3□□□□□ -0.6
CUX1-205ENST00000425244 LRRC34Q8IZ02 419 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 C3orf20Q8ND61 904 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.3□□□□□ -0.6
CUX1-205ENST00000425244 ATXN2LQ8WWM7 1075 aaKnown RBP11.3□□□□□ -0.6
CUX1-205ENST00000425244 OSBPL7Q9BZF2 842 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 CXorf56Q9H5V9 222 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 ERAP1Q9NZ08 941 aa11.3□□□□□ -0.6
CUX1-205ENST00000425244 TP73O15350 636 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 CLTAP09496 248 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 ITIH2P19823 946 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 NOMO3P69849 1222 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 BEX3Q00994 111 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 NCOA4Q13772 614 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 TAOK1Q7L7X3 1001 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 CROCCP2Q86T23 111 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 RHOT1Q8IXI2 618 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 ANKRD42Q8N9B4 389 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 GRK7Q8WTQ7 553 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 MAIP1Q8WWC4 291 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 APBA2Q99767 749 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 OSBPL8Q9BZF1 889 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 KCNK9Q9NPC2 374 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 GGA2Q9UJY4 613 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 ARID2Q68CP9 1835 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 C5orf60A6NFR6 353 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 TTLL13PA6NNM8 815 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 H3BRB1 525 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 ALDH1A1P00352 501 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 ELNP15502 786 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 CREB1P16220 341 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 ATF7P17544 494 aaPredicted RBP11.29□□□□□ -0.6
CUX1-205ENST00000425244 MAN1A1P33908 653 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 NAMPTP43490 491 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 VEGFBP49765 207 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 CLCN3P51790 818 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 CLDN10P78369 228 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 ADCY1Q08828 1119 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 TRIM32Q13049 653 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 PTK6Q13882 451 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 ATP13A4Q4VNC1 1196 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 SLFN12LQ6IEE8 588 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 TLK2Q86UE8 772 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 CCDC197Q8NCU1 140 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 ATL2Q8NHH9 583 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 PPTC7Q8NI37 304 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 PRPF31Q8WWY3 499 aaKnown RBP11.29□□□□□ -0.6
CUX1-205ENST00000425244 SOCS4Q8WXH5 440 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 ARHGEF2Q92974 986 aaKnown RBP11.29□□□□□ -0.6
CUX1-205ENST00000425244 JPH2Q9BR39 696 aaPredicted RBP11.29□□□□□ -0.6
CUX1-205ENST00000425244 IMPG2Q9BZV3 1241 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 TUT1Q9H6E5 874 aaKnown RBP11.29□□□□□ -0.6
CUX1-205ENST00000425244 DHX33Q9H6R0 707 aaKnown RBP11.29□□□□□ -0.6
CUX1-205ENST00000425244 MRPL47Q9HD33 250 aaKnown RBP11.29□□□□□ -0.6
CUX1-205ENST00000425244 TBK1Q9UHD2 729 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 EVPLQ92817 2033 aa11.29□□□□□ -0.6
CUX1-205ENST00000425244 CSDE1O75534 798 aaKnown RBP11.28□□□□□ -0.6
CUX1-205ENST00000425244 KRT10P13645 584 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 INSRRP14616 1297 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 TNFSF9P41273 254 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 SP3Q02447 781 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 ANKS1BQ7Z6G8 1248 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 EXOC3L1Q86VI1 746 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 RHPN2Q8IUC4 686 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 SLCO2A1Q92959 643 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 CENPTQ96BT3 561 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 ACSF2Q96CM8 615 aaPredicted RBP11.28□□□□□ -0.6
CUX1-205ENST00000425244 SGSM3Q96HU1 749 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 NLRP4Q96MN2 994 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 ZNF317Q96PQ6 595 aaPredicted RBP11.28□□□□□ -0.6
CUX1-205ENST00000425244 CGRRF1Q99675 332 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 ELAC2Q9BQ52 826 aaKnown RBP11.28□□□□□ -0.6
CUX1-205ENST00000425244 NIFKQ9BYG3 293 aaKnown RBP11.28□□□□□ -0.6
CUX1-205ENST00000425244 SUFUQ9UMX1 484 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 A0A0B4J269 797 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 DNM1LO00429 736 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 MMP3P08254 477 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 ZNF865P0CJ78 1059 aaPredicted RBP11.28□□□□□ -0.6
CUX1-205ENST00000425244 TCF4P15884 667 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 IVDP26440 423 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms