RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SLF2Q8IX21 1173 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 ULK2Q8IYT8 1036 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 ALLCQ8N6M5 410 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 LINC00116Q8NCU8 138 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 EXD1Q8NHP7 514 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 ALKBH8Q96BT7 664 aaKnown RBP11.26□□□□□ -0.61
USP54-204ENST00000422491 SETDB2Q96T68 719 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 PAFAH2Q99487 392 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 SLC7A8Q9UHI5 535 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 SHOC2Q9UQ13 582 aa11.26□□□□□ -0.61
USP54-204ENST00000422491 DENND3A2RUS2 1198 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 A6NJR5 290 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 PIAS1O75925 651 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 ASLP04424 464 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 ADRB2P07550 413 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 TAL1P17542 331 aaPredicted RBP11.25□□□□□ -0.61
USP54-204ENST00000422491 CD58P19256 250 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 HOXA13P31271 388 aaPredicted RBP11.25□□□□□ -0.61
USP54-204ENST00000422491 ZNF76P36508 570 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 TFDP1Q14186 410 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 GRM2Q14416 872 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 EAPPQ56P03 285 aaPredicted RBP11.25□□□□□ -0.61
USP54-204ENST00000422491 TMCO4Q5TGY1 634 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 RAPH1Q70E73 1250 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 SPATA24Q86W54 205 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 ANKMY2Q8IV38 441 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 HIC2Q96JB3 615 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 CLPTM1LQ96KA5 538 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 NACC1Q96RE7 527 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 KLF6Q99612 283 aaPredicted RBP11.25□□□□□ -0.61
USP54-204ENST00000422491 TTC1Q99614 292 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 TMEM206Q9H813 350 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 GPAMQ9HCL2 828 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 ETNK2Q9NVF9 386 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 COQ4Q9Y3A0 265 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 E5RJQ4 531 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 C6orf229H3BNL8 230 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 HARSP12081 509 aaKnown RBP11.25□□□□□ -0.61
USP54-204ENST00000422491 VAV1P15498 845 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 GLRA2P23416 452 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 SSTR1P30872 391 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 ERFP50548 548 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 SCNN1BP51168 640 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 GPC3P51654 580 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 USH1GQ495M9 461 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 HSF5Q4G112 596 aaPredicted RBP11.25□□□□□ -0.61
USP54-204ENST00000422491 C2CD6Q53TS8 623 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 ADGRG6Q86SQ4 1221 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 MYPNQ86TC9 1320 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 PDSS2Q86YH6 399 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 NME8Q8N427 588 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 DCAKDQ8WVC6 231 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 SLAIN2Q9P270 581 aa11.25□□□□□ -0.61
USP54-204ENST00000422491 FAM237BA0A1B0GVD1 139 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 PRELPP51888 382 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 USP46P62068 366 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 CFAP157Q5JU67 520 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 NLRX1Q86UT6 975 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 OR6Y1Q8NGX8 325 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 DCAF4Q8WV16 495 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 CPA5Q8WXQ8 436 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 PLEKHG4BQ96PX9 1271 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 WDR83Q9BRX9 315 aaKnown RBP11.24□□□□□ -0.61
USP54-204ENST00000422491 ACSS3Q9H6R3 686 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 CNTN3Q9P232 1028 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 HSFX1Q9UBD0 423 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 ZNF148Q9UQR1 794 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 ATP2A1O14983 1001 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 ATP9BO43861 1147 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 RAD21O60216 631 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 COQ9O75208 318 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 CIB2O75838 187 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 BAG2O95816 211 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 ENO1P06733 434 aaKnown RBP11.24□□□□□ -0.61
USP54-204ENST00000422491 SLURP2P0DP57 97 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 KRT10P13645 584 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 BGNP21810 368 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 NFX1Q12986 1120 aaKnown RBP11.24□□□□□ -0.61
USP54-204ENST00000422491 GRAPQ13588 217 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 TTLL12Q14166 644 aaPredicted RBP11.24□□□□□ -0.61
USP54-204ENST00000422491 TPTE2Q6XPS3 522 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 GRAPLQ8TC17 118 aaPredicted RBP11.24□□□□□ -0.61
USP54-204ENST00000422491 ELMO3Q96BJ8 720 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 CYTH2Q99418 400 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 EPB41L1Q9H4G0 881 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 GMEB1Q9Y692 573 aa11.24□□□□□ -0.61
USP54-204ENST00000422491 LPXNO60711 386 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 GAD2Q05329 585 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 OASLQ15646 514 aaKnown RBP11.23□□□□□ -0.61
USP54-204ENST00000422491 HIF1AQ16665 826 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 C6orf163Q5TEZ5 329 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 SLFN13Q68D06 897 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 KRT39Q6A163 491 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 MON1BQ7L1V2 547 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 FBXO11Q86XK2 927 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.23□□□□□ -0.61
USP54-204ENST00000422491 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.23□□□□□ -0.61
USP54-204ENST00000422491 TRIM11Q96F44 468 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 NT5C1BQ96P26 610 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 ACCSQ96QU6 501 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms