RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 C1orf127Q8N9H9 656 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 LINC00301Q8NCQ3 95 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 SPATA18Q8TC71 538 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 CSGALNACT1Q8TDX6 532 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 CACTINQ8WUQ7 758 aaKnown RBP12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 ATRIPQ8WXE1 791 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 RUBCNQ92622 972 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 RSPRY1Q96DX4 576 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 HINFPQ9BQA5 517 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 LPIN3Q9BQK8 851 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 CBWD1Q9BRT8 395 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 MKNK1Q9BUB5 465 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 FAM126AQ9BYI3 521 aaPredicted RBP12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 CUEDC2Q9H467 287 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 TASP1Q9H6P5 420 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 FOXD4L1Q9NU39 408 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 ZSCAN32Q9NX65 697 aa12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 ABI2Q9NYB9 513 aaPredicted RBP12.45□□□□□ -0.42
SQSTM1-203ENST00000422245 SPTLC2O15270 562 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 PPP6R2O75170 966 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 ITGB3P05106 788 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 HAPLN1P10915 354 aaPredicted RBP12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 WNT7BP56706 349 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 PLCB2Q00722 1185 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 MTAPQ13126 283 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 PPP2R5DQ14738 602 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 NFE2Q16621 373 aaPredicted RBP12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 ARHGAP29Q52LW3 1261 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 MAMSTRQ6ZN01 415 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 TMEM86AQ8N2M4 240 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 PDCL2Q8N4E4 241 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 PDILTQ8N807 584 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 ZBTB44Q8NCP5 570 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 LEO1Q8WVC0 666 aaPredicted RBP12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 NELL1Q92832 810 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 ZNF396Q96N95 335 aaPredicted RBP12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 FGFBP2Q9BYJ0 223 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 PANK2Q9BZ23 570 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 C8orf33Q9H7E9 229 aaPredicted RBP12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 IL21Q9HBE4 155 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 ABCB6Q9NP58 842 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 L1RE1Q9UN81 338 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 AGAP1Q9UPQ3 857 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 PCDHB5Q9Y5E4 795 aa12.44□□□□□ -0.42
SQSTM1-203ENST00000422245 CACNA1AO00555 2505 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 WDR87Q6ZQQ6 2873 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 HUS1O60921 280 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 PRPF6O94906 941 aaKnown RBP12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 PRAMEF12O95522 483 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 YEATS4O95619 227 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 TMEM191BP0C7N4 346 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 ID4P47928 161 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 CCR3P51677 355 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 KPNA1P52294 538 aaPredicted RBP12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 RBP5P82980 135 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 CYP4F8P98187 520 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 AMPD3Q01432 767 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 MYL7Q01449 175 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 BFSP1Q12934 665 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 LRRC32Q14392 662 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 E2F4Q16254 413 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 ERMP1Q7Z2K6 904 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 LRRTM3Q86VH5 581 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 GPD1LQ8N335 351 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 SUMF1Q8NBK3 374 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 ZSWIM2Q8NEG5 633 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 BPIFB1Q8TDL5 484 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 ACBD6Q9BR61 282 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 TRIM9Q9C026 710 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 MTMR12Q9C0I1 747 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 EPC1Q9H2F5 836 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 PDE11AQ9HCR9 933 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 KBTBD4Q9NVX7 518 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 GDAP2Q9NXN4 497 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 GPR179Q6PRD1 2367 aa12.43□□□□□ -0.42
SQSTM1-203ENST00000422245 KIF26AQ9ULI4 1882 aaPredicted RBP12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 GOLGA8IPA6NC78 632 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 GOLGA8JA6NMD2 632 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 SLC38A8A6NNN8 435 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 TULP1O00294 542 aaPredicted RBP12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 EIF3DO15371 548 aaKnown RBP eCLIP12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 LILRB5O75023 590 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 KRT19P08727 400 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 PDIA4P13667 645 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 CCNE1P24864 410 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 DDX6P26196 483 aaKnown RBP eCLIP12.42□□□□□ -0.421e-6■□□□□ 10.6
SQSTM1-203ENST00000422245 PCSK1P29120 753 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 CTHP32929 405 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 NRLP54845 237 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 ASIC1P78348 528 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 INTS6LQ5JSJ4 861 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 CNNM4Q6P4Q7 775 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 RALGPS2Q86X27 583 aaPredicted RBP12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 ADGRF2Q8IZF7 708 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 CSGALNACT2Q8N6G5 542 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 TOP6BLQ8N6T0 577 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 IQUBQ8NA54 791 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 CXorf38Q8TB03 319 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 NOC3LQ8WTT2 800 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 SNX21Q969T3 373 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms