RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 EGR3Q06889 387 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 SNX30Q5VWJ9 437 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ZNF765Q7L2R6 523 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 MILR1Q7Z6M3 343 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 FAM90A1Q86YD7 464 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 CREG2Q8IUH2 290 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 GPR156Q8NFN8 814 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 CFHR4Q92496 578 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 GOLGA1Q92805 767 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 GATA6Q92908 595 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 SCARF2Q96GP6 870 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-207ENST00000419472 FAM46AQ96IP4 442 aaKnown RBP5.67□□□□□ -1.5
VPS13A-207ENST00000419472 MAP6Q96JE9 813 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 HHIPL1Q96JK4 782 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 FAM167AQ96KS9 214 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 TIGD1Q96MW7 591 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 CARD11Q9BXL7 1154 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 SEZ6LQ9BYH1 1024 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ARHGAP39Q9C0H5 1083 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 PDGFDQ9GZP0 370 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-207ENST00000419472 PITHD1Q9GZP4 211 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-207ENST00000419472 USP44Q9H0E7 712 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ATP8A2Q9NTI2 1148 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 PCDHB4Q9Y5E5 795 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 CCDC144AA2RUR9 1427 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 MYOM2P54296 1465 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 hCG_1807616A0A1W2PRN6 198 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 FAM171A2A8MVW0 826 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 PYCARD-AS1I3L0S3 204 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 CLGNO14967 610 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 TOM1O60784 492 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 XRCC6P12956 609 aaKnown RBP eCLIP5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ALOX12P18054 663 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 STAT5AP42229 794 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 SLC20A2Q08357 652 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 GALNT2Q10471 571 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 DBPQ10586 325 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-207ENST00000419472 PSMD6Q15008 389 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 VSIG1Q86XK7 387 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 CCDC117Q8IWD4 279 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-207ENST00000419472 SPACA3Q8IXA5 215 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 TMEM130Q8N3G9 435 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 DBNDD2Q9BQY9 259 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 MAGEB5Q9BZ81 275 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 TXLNGYQ9BZA5 131 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 KCNF1Q9H3M0 494 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 RNPEPQ9H4A4 650 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 AKTIPQ9H8T0 292 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 IMPACTQ9P2X3 320 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ZNF212Q9UDV6 495 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 FTSJ1Q9UET6 329 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ACAD8Q9UKU7 415 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 PALD1Q9ULE6 856 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 DNPH1O43598 174 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 TBC1D4O60343 1298 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 KRT38O76015 456 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 MATN4O95460 622 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 SGPL1O95470 568 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 CSF1P09603 554 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 RAC2P15153 192 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 FPR1P21462 350 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 MUTP22033 750 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 CD69Q07108 199 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 CDC16Q13042 620 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 HECTD3Q5T447 861 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 GADL1Q6ZQY3 521 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 ARMC10Q8N2F6 343 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 CPT1CQ8TCG5 803 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 TBC1D22AQ8WUA7 517 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 KBTBD7Q8WVZ9 684 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 RSAD2Q8WXG1 361 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 ASIC4Q96FT7 647 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 BAG1Q99933 345 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-207ENST00000419472 PRDM13Q9H4Q3 707 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 ACSL6Q9UKU0 697 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 PTCH1Q13635 1447 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 SPATA31E1Q6ZUB1 1445 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 FADS2P1A8MWK0 482 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 AP3D1O14617 1153 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 GFRA3O60609 400 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 USP2O75604 605 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-207ENST00000419472 SEC24DO94855 1032 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-207ENST00000419472 MLYCDO95822 493 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 PECAM1P16284 738 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-207ENST00000419472 ACSL1P33121 698 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 KCNJ5P48544 419 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 IFI35P80217 286 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-207ENST00000419472 SRSF11Q05519 484 aaKnown RBP5.66□□□□□ -1.5
VPS13A-207ENST00000419472 WASHC5Q12768 1159 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 CUL4AQ13619 759 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 MAP3K21Q5TCX8 1036 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 RPUSD3Q6P087 351 aaKnown RBP5.66□□□□□ -1.5
VPS13A-207ENST00000419472 CRTC1Q6UUV9 634 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 ZNF783Q6ZMS7 281 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 GLB1L2Q8IW92 636 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 HSCBQ8IWL3 235 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 MGARPQ8TDB4 240 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 STON2Q8WXE9 905 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 RNF125Q96EQ8 232 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 DDX23Q9BUQ8 820 aaKnown RBP5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms