RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 PSMC1P62191 440 aaKnown RBP13.36□□□□□ -0.27
SKA1-203ENST00000417656 TSPY1Q01534 308 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 ITIH3Q06033 890 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 TYRO3Q06418 890 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 ADCY1Q08828 1119 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 GPR17Q13304 367 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 SGSM1Q2NKQ1 1148 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 PUS10Q3MIT2 529 aaKnown RBP13.36□□□□□ -0.27
SKA1-203ENST00000417656 HSP90AA4PQ58FG1 418 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 INTS6LQ5JSJ4 861 aaKnown RBP13.36□□□□□ -0.27
SKA1-203ENST00000417656 TJAP1Q5JTD0 557 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 PPM1LQ5SGD2 360 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 TPGS2Q68CL5 300 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 DPH6Q7L8W6 267 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 IRF2BP1Q8IU81 584 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 TTC9BQ8N6N2 239 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 FBXL13Q8NEE6 735 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 CMASQ8NFW8 434 aaPredicted RBP13.36□□□□□ -0.27
SKA1-203ENST00000417656 SUSD6Q92537 303 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 TAF4BQ92750 862 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 ZNF707Q96C28 371 aaPredicted RBP13.36□□□□□ -0.27
SKA1-203ENST00000417656 SYT15Q9BQS2 421 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 DNAJC25Q9H1X3 360 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 ADAM7Q9H2U9 754 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 CRISPLD1Q9H336 500 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 THAP9Q9H5L6 903 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 CYP4F11Q9HBI6 524 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 ZDHHC7Q9NXF8 308 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 AFF4Q9UHB7 1163 aaKnown RBP13.36□□□□□ -0.27
SKA1-203ENST00000417656 INSL5Q9Y5Q6 135 aa13.36□□□□□ -0.27
SKA1-203ENST00000417656 CCDC195A0A1B0GUA6 201 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 CCL16O15467 120 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 N4BP1O75113 896 aaKnown RBP13.35□□□□□ -0.27
SKA1-203ENST00000417656 TACC1O75410 805 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 BMP1P13497 986 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 PCSK1P29120 753 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 ELF1P32519 619 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 LHX1P48742 406 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 CDH8P55286 799 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 CBX2Q14781 532 aaPredicted RBP13.35□□□□□ -0.27
SKA1-203ENST00000417656 SMAD2Q15796 467 aaKnown RBP13.35□□□□□ -0.27
SKA1-203ENST00000417656 CT47A1Q5JQC4 288 aaPredicted RBP13.35□□□□□ -0.27
SKA1-203ENST00000417656 CES5AQ6NT32 575 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 CCDC149Q6ZUS6 474 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 GPR149Q86SP6 731 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 LRRTM3Q86VH5 581 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 CREBRFQ8IUR6 639 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 TCEAL8Q8IYN2 117 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 ATAD1Q8NBU5 361 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 CCDC150Q8NCX0 1101 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 OR6B3Q8NGW1 331 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 SMG7Q92540 1137 aaKnown RBP13.35□□□□□ -0.27
SKA1-203ENST00000417656 NIF3L1Q9GZT8 377 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 SNX25Q9H3E2 840 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 TMLHEQ9NVH6 421 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 RAB20Q9NX57 234 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 FAM50BQ9Y247 325 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 YIPF1Q9Y548 306 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.35□□□□□ -0.27
SKA1-203ENST00000417656 PTPRDP23468 1912 aa13.35□□□□□ -0.27
SKA1-203ENST00000417656 SYCE3A1L190 88 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 ATP2C2O75185 946 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 AFPP02771 609 aaKnown RBP13.34□□□□□ -0.27
SKA1-203ENST00000417656 HNRNPA1P09651 372 aaKnown RBP eCLIP13.34□□□□□ -0.27
SKA1-203ENST00000417656 P4HA1P13674 534 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 LMO2P25791 158 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 HOXA9P31269 272 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 MTHFRP42898 656 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 MTIF2P46199 727 aaKnown RBP13.34□□□□□ -0.27
SKA1-203ENST00000417656 FAM114A1Q8IWE2 563 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 DCP1BQ8IZD4 617 aaKnown RBP13.34□□□□□ -0.27
SKA1-203ENST00000417656 RIPOR3Q96MK2 946 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 PKMYT1Q99640 499 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 ACBD6Q9BR61 282 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 BCO2Q9BYV7 579 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 PRKD2Q9BZL6 878 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 DPEP3Q9H4B8 488 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 POMKQ9H5K3 350 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 CRTAC1Q9NQ79 661 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 ABI2Q9NYB9 513 aaPredicted RBP13.34□□□□□ -0.27
SKA1-203ENST00000417656 HMGXB4Q9UGU5 601 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 COQ4Q9Y3A0 265 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 NFE2L3Q9Y4A8 694 aa13.34□□□□□ -0.27
SKA1-203ENST00000417656 SPTBN5Q9NRC6 3674 aaKnown RBP13.34□□□□□ -0.27
SKA1-203ENST00000417656 MYBPHLA2RUH7 354 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 ATMINO43313 823 aaPredicted RBP13.33□□□□□ -0.28
SKA1-203ENST00000417656 SOAT2O75908 522 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 PAPLNO95428 1278 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 LRG1P02750 347 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 PDGFRBP09619 1106 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 SP100P23497 879 aaPredicted RBP13.33□□□□□ -0.28
SKA1-203ENST00000417656 TWF1Q12792 350 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 KCNH2Q12809 1159 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 DUSP4Q13115 394 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 ORC1Q13415 861 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 ANO6Q4KMQ2 910 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 ENOX1Q8TC92 643 aaKnown RBP13.33□□□□□ -0.28
SKA1-203ENST00000417656 ADAMTS19Q8TE59 1207 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 MYLPFQ96A32 169 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 NECTIN4Q96NY8 510 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms