RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PRPF6O94906 941 aaKnown RBP12.48□□□□□ -0.41
USP4-204ENST00000416417 ITGB3P05106 788 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 HAPLN1P10915 354 aaPredicted RBP12.48□□□□□ -0.41
USP4-204ENST00000416417 SCP2P22307 547 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 SRSF5Q13243 272 aaKnown RBP12.48□□□□□ -0.41
USP4-204ENST00000416417 PON2Q15165 354 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 ITIH5Q86UX2 942 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 THEM5Q8N1Q8 247 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 NELL1Q92832 810 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 CBWD1Q9BRT8 395 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 SLC46A2Q9BY10 475 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 TRPV5Q9NQA5 729 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 MTMR6Q9Y217 621 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 ASB3Q9Y575 518 aa12.48□□□□□ -0.41
USP4-204ENST00000416417 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.48□□□□□ -0.41
USP4-204ENST00000416417 SPECC1L-ADORA2AF8WAN1 911 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 STAT6P42226 847 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 TUFMP49411 452 aaKnown RBP12.47□□□□□ -0.41
USP4-204ENST00000416417 FCHO2Q0JRZ9 810 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 BFSP1Q12934 665 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 VEPH1Q14D04 833 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 TAF12Q16514 161 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 RSPO4Q2I0M5 234 aaPredicted RBP12.47□□□□□ -0.41
USP4-204ENST00000416417 SV2CQ496J9 727 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 ARHGAP15Q53QZ3 475 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 FOXD4L5Q5VV16 416 aaPredicted RBP12.47□□□□□ -0.41
USP4-204ENST00000416417 HEATR6Q6AI08 1181 aaKnown RBP12.47□□□□□ -0.41
USP4-204ENST00000416417 OSTM1Q86WC4 334 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 SYCP3Q8IZU3 236 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 PDCL2Q8N4E4 241 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 C1orf127Q8N9H9 656 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 TTC16Q8NEE8 873 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 FOXD4L4Q8WXT5 416 aaPredicted RBP12.47□□□□□ -0.41
USP4-204ENST00000416417 TASP1Q9H6P5 420 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 PDE11AQ9HCR9 933 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 PANK4Q9NVE7 773 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 RBAKQ9NYW8 714 aaPredicted RBP12.47□□□□□ -0.41
USP4-204ENST00000416417 DSEQ9UL01 958 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 L1RE1Q9UN81 338 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 MAGED2Q9UNF1 606 aaPredicted RBP12.47□□□□□ -0.41
USP4-204ENST00000416417 CCL26Q9Y258 94 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 GPR179Q6PRD1 2367 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 CHURC1-FNTBB4DL54 471 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 IL18RAPO95256 599 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 KRT19P08727 400 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 GAP43P17677 238 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 PDCP20941 246 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 CTHP32929 405 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 TXLNAP40222 546 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 FNTBP49356 437 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 POSTNQ15063 836 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 DDR2Q16832 855 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 TXNDC8Q6A555 127 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 TRIM68Q6AZZ1 485 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 DGLUCYQ7Z3D6 616 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 TMEM150AQ86TG1 271 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 BRSK2Q8IWQ3 736 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 CSGALNACT2Q8N6G5 542 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 MAB21L3Q8N8X9 362 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 RIN3Q8TB24 985 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 BPIFB1Q8TDL5 484 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 E2F7Q96AV8 911 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 HVCN1Q96D96 273 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 MTMR12Q9C0I1 747 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 EPC1Q9H2F5 836 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 PARD6AQ9NPB6 346 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 POLR3BQ9NW08 1133 aaPredicted RBP12.47□□□□□ -0.41
USP4-204ENST00000416417 TFIP11Q9UBB9 837 aaKnown RBP12.47□□□□□ -0.41
USP4-204ENST00000416417 SEL1LQ9UBV2 794 aa12.47□□□□□ -0.41
USP4-204ENST00000416417 PTPRJQ12913 1337 aa12.46□□□□□ -0.41
USP4-204ENST00000416417 MYBPHLA2RUH7 354 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 PRPF40AO75400 957 aaKnown RBP12.46□□□□□ -0.42
USP4-204ENST00000416417 HMGA1P17096 107 aaKnown RBP12.46□□□□□ -0.42
USP4-204ENST00000416417 CYP2F1P24903 491 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 ABCD1P33897 745 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 CXCL12P48061 93 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 SLC39A14Q15043 492 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 FOXD4L6Q3SYB3 417 aaPredicted RBP12.46□□□□□ -0.42
USP4-204ENST00000416417 PKN3Q6P5Z2 889 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 FOXD4L3Q6VB84 417 aaPredicted RBP12.46□□□□□ -0.42
USP4-204ENST00000416417 CCDC73Q6ZRK6 1079 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 PRR23BQ6ZRT6 265 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 ERMP1Q7Z2K6 904 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 DCP1BQ8IZD4 617 aaKnown RBP12.46□□□□□ -0.42
USP4-204ENST00000416417 CXorf38Q8TB03 319 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 SPPL2BQ8TCT7 592 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 ZNF560Q96MR9 790 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 GCNAQ96QF7 691 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 GKN1Q9NS71 199 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 DDX43Q9NXZ2 648 aaKnown RBP12.46□□□□□ -0.42
USP4-204ENST00000416417 SIX4Q9UIU6 781 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 GTF3C4Q9UKN8 822 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 USP18Q9UMW8 372 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 EXOC7Q9UPT5 735 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 PCDHB5Q9Y5E4 795 aa12.46□□□□□ -0.42
USP4-204ENST00000416417 OTOL1A6NHN0 477 aaPredicted RBP12.45□□□□□ -0.42
USP4-204ENST00000416417 HRO43593 1189 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 ATP2C2O75185 946 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 FGF19O95750 216 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 F11P03951 625 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms