RNA–Protein interactions for RNA: ENST00000415395.6

RFFL-205, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 5 BASIC

Gene RFFL, Length 1,706 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-205ENST00000415395 PIN4Q9Y237 131 aaKnown RBP12.3□□□□□ -0.44
RFFL-205ENST00000415395 STXBP5LQ9Y2K9 1186 aa12.3□□□□□ -0.44
RFFL-205ENST00000415395 CDY2AQ9Y6F7 541 aa12.3□□□□□ -0.44
RFFL-205ENST00000415395 CST3P01034 146 aaPredicted RBP12.29□□□□□ -0.44
RFFL-205ENST00000415395 NFICP08651 508 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 GZMAP12544 262 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 CYP11B1P15538 503 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 HNRNPH1P31943 449 aaKnown RBP12.29□□□□□ -0.44
RFFL-205ENST00000415395 HPDP32754 393 aaPredicted RBP12.29□□□□□ -0.44
RFFL-205ENST00000415395 RNASE9P60153 205 aaKnown RBP12.29□□□□□ -0.44
RFFL-205ENST00000415395 HTRA3P83110 453 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 ZNF844Q08AG5 666 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 MGAT3Q09327 533 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 ITGA7Q13683 1181 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 ZNF699Q32M78 642 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 LHX8Q68G74 356 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 JADE1Q6IE81 842 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 GLYCTKQ8IVS8 523 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 RHOT2Q8IXI1 618 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 U2AF1L4Q8WU68 220 aaKnown RBP12.29□□□□□ -0.44
RFFL-205ENST00000415395 SNX27Q96L92 541 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 FAM129AQ9BZQ8 928 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 SENP6Q9GZR1 1112 aaPredicted RBP12.29□□□□□ -0.44
RFFL-205ENST00000415395 CARD9Q9H257 536 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 CHST12Q9NRB3 414 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 NUB1Q9Y5A7 615 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 PCDHB2Q9Y5E7 798 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 SQORQ9Y6N5 450 aa12.29□□□□□ -0.44
RFFL-205ENST00000415395 MIF4GDA9UHW6 222 aaKnown RBP12.28□□□□□ -0.44
RFFL-205ENST00000415395 CYP26A1O43174 497 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 ACO1P21399 889 aaKnown RBP12.28□□□□□ -0.44
RFFL-205ENST00000415395 RDXP35241 583 aaKnown RBP12.28□□□□□ -0.44
RFFL-205ENST00000415395 MYL6P60660 151 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 CDR2Q01850 454 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 ACTN3Q08043 901 aaPredicted RBP12.28□□□□□ -0.44
RFFL-205ENST00000415395 PPP1R2P3Q6NXS1 205 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 TMC3Q7Z5M5 1100 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 NT5DC3Q86UY8 548 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 FAM228AQ86W67 206 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 CACNA2D3Q8IZS8 1091 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 UBR7Q8N806 425 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 C1orf127Q8N9H9 656 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 CENPTQ96BT3 561 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 CYFIP2Q96F07 1278 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 FMO2Q99518 471 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 XYLT2Q9H1B5 865 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 CNTN3Q9P232 1028 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 TRIM17Q9Y577 477 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.28□□□□□ -0.44
RFFL-205ENST00000415395 H0YGN5 161 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 GPR182O15218 404 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 XPOTO43592 962 aaKnown RBP12.28□□□□□ -0.44
RFFL-205ENST00000415395 TRAPPC3O43617 180 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 SGPL1O95470 568 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 KRT5P13647 590 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 P4HA1P13674 534 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 ECHS1P30084 290 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 KRT71Q3SY84 523 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 FAM26DQ5JW98 314 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 GKAP1Q5VSY0 366 aaPredicted RBP12.28□□□□□ -0.44
RFFL-205ENST00000415395 SPOPLQ6IQ16 392 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 ALKAL1Q6UXT8 129 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 NOP9Q86U38 636 aaKnown RBP12.28□□□□□ -0.44
RFFL-205ENST00000415395 RPUSD2Q8IZ73 545 aaKnown RBP12.28□□□□□ -0.44
RFFL-205ENST00000415395 TTC39CQ8N584 583 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 UBL4BQ8N7F7 174 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 SLC43A3Q8NBI5 491 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 CXorf38Q8TB03 319 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 DDX1Q92499 740 aaKnown RBP12.28□□□□□ -0.44
RFFL-205ENST00000415395 FAM84AQ96KN4 292 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 AP1M1Q9BXS5 423 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 EIF2AQ9BY44 585 aaKnown RBP12.28□□□□□ -0.44
RFFL-205ENST00000415395 DDX47Q9H0S4 455 aaKnown RBP12.28□□□□□ -0.44
RFFL-205ENST00000415395 RABEP2Q9H5N1 569 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.28□□□□□ -0.44
RFFL-205ENST00000415395 BCCIPQ9P287 314 aaKnown RBP eCLIP12.28□□□□□ -0.44
RFFL-205ENST00000415395 SIX4Q9UIU6 781 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 NFS1Q9Y697 457 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 PTCH2Q9Y6C5 1203 aa12.28□□□□□ -0.44
RFFL-205ENST00000415395 ANKRD62A6NC57 917 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 RTN2O75298 545 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 PPFIA2O75334 1257 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 MYCNP04198 464 aaPredicted RBP12.27□□□□□ -0.45
RFFL-205ENST00000415395 RBP5P82980 135 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 FMO1Q01740 532 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 XKR4Q5GH76 650 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 ZNF667Q5HYK9 610 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 UBXN11Q5T124 520 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 TRIM72Q6ZMU5 477 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 SLC47A2Q86VL8 602 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 HACE1Q8IYU2 909 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 SLC20A1Q8WUM9 679 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 KIF12Q96FN5 646 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.27□□□□□ -0.45
RFFL-205ENST00000415395 CYP3A43Q9HB55 503 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 PPANQ9NQ55 473 aaKnown RBP12.27□□□□□ -0.45
RFFL-205ENST00000415395 DPP3Q9NY33 737 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 SNTG2Q9NY99 539 aa12.27□□□□□ -0.45
RFFL-205ENST00000415395 MTRF1LQ9UGC7 380 aaKnown RBP12.27□□□□□ -0.45
RFFL-205ENST00000415395 SLC12A6Q9UHW9 1150 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms