RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TUT1Q9H6E5 874 aaKnown RBP15.75■□□□□ 0.11
USP4-203ENST00000415188 CERS4Q9HA82 394 aa15.75■□□□□ 0.11
USP4-203ENST00000415188 CNOT8Q9UFF9 292 aaKnown RBP15.75■□□□□ 0.11
USP4-203ENST00000415188 C17orf102A2RUQ5 167 aa15.74■□□□□ 0.11
USP4-203ENST00000415188 TMEM110-MUSTN1A8MSY1 372 aa15.74■□□□□ 0.11
USP4-203ENST00000415188 TULP2O00295 520 aa15.74■□□□□ 0.11
USP4-203ENST00000415188 BAIAP3O94812 1187 aa15.74■□□□□ 0.11
USP4-203ENST00000415188 HLA-DRAP01903 254 aa15.74■□□□□ 0.11
USP4-203ENST00000415188 CXCL10P02778 98 aa15.74■□□□□ 0.11
USP4-203ENST00000415188 C4BPAP04003 597 aaKnown RBP15.74■□□□□ 0.11
USP4-203ENST00000415188 KRT5P13647 590 aa15.74■□□□□ 0.11
USP4-203ENST00000415188 GLRA2P23416 452 aa15.74■□□□□ 0.11
USP4-203ENST00000415188 TBXAS1P24557 533 aaPredicted RBP15.74■□□□□ 0.11
USP4-203ENST00000415188 PTGIRP43119 386 aa15.74■□□□□ 0.11
USP4-203ENST00000415188 WDR5P61964 334 aaKnown RBP15.74■□□□□ 0.11
USP4-203ENST00000415188 ZNF211Q13398 564 aaPredicted RBP15.74■□□□□ 0.11
USP4-203ENST00000415188 CCDC85BQ15834 202 aaPredicted RBP15.74■□□□□ 0.11
USP4-203ENST00000415188 SLC13A5Q86YT5 568 aaPredicted RBP15.74■□□□□ 0.11
USP4-203ENST00000415188 EXOC8Q8IYI6 725 aa15.74■□□□□ 0.11
USP4-203ENST00000415188 PHOSPHO2Q8TCD6 241 aa15.74■□□□□ 0.11
USP4-203ENST00000415188 KRT35Q92764 455 aa15.74■□□□□ 0.11
USP4-203ENST00000415188 CELF4Q9BZC1 486 aaKnown RBP15.74■□□□□ 0.11
USP4-203ENST00000415188 K7ERI5 159 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 RFXAPO00287 272 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 TREHO43280 583 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 GAS2O43903 313 aaKnown RBP15.73■□□□□ 0.11
USP4-203ENST00000415188 UNGP13051 313 aaPredicted RBP15.73■□□□□ 0.11
USP4-203ENST00000415188 ATP4AP20648 1035 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 MAN1A1P33908 653 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 THPOP40225 353 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 PIK3CAP42336 1068 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 DEFB103AP81534 67 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 DHX9Q08211 1270 aaKnown RBP15.73■□□□□ 0.11
USP4-203ENST00000415188 DNAJC21Q5F1R6 531 aaKnown RBP15.73■□□□□ 0.11
USP4-203ENST00000415188 NAA35Q5VZE5 725 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 CNKSR3Q6P9H4 555 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 ZPBP2Q6X784 338 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 SRLQ86TD4 932 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 SERINC5Q86VE9 423 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 PRELID2Q8N945 189 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 ASAP3Q8TDY4 903 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 UBLCP1Q8WVY7 318 aaPredicted RBP15.73■□□□□ 0.11
USP4-203ENST00000415188 SLCO2A1Q92959 643 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 MAGOHBQ96A72 148 aaKnown RBP15.73■□□□□ 0.11
USP4-203ENST00000415188 VCPIP1Q96JH7 1222 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 CEP89Q96ST8 783 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 TRIM51Q9BSJ1 452 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 DPH5Q9H2P9 285 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 RNPEPQ9H4A4 650 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 ERVK-5Q9HDB9 667 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 ZDHHC18Q9NUE0 388 aa15.73■□□□□ 0.11
USP4-203ENST00000415188 MTRF1LQ9UGC7 380 aaKnown RBP15.73■□□□□ 0.11
USP4-203ENST00000415188 A0A0B4J269 797 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 EPOPA6NHQ4 379 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 PARNO95453 639 aaKnown RBP15.72■□□□□ 0.11
USP4-203ENST00000415188 CYP1A1P04798 512 aaPredicted RBP15.72■□□□□ 0.11
USP4-203ENST00000415188 TNNI1P19237 187 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 HOXC8P31273 242 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 EFNA5P52803 228 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 CENPCQ03188 943 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 ZNF844Q08AG5 666 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 PTP4A2Q12974 167 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 TARBP2Q15633 366 aaKnown RBP15.72■□□□□ 0.11
USP4-203ENST00000415188 LIN9Q5TKA1 542 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 SYDE1Q6ZW31 735 aaPredicted RBP15.72■□□□□ 0.11
USP4-203ENST00000415188 SPRED2Q7Z698 418 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 HOOK3Q86VS8 718 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 SPATS2Q86XZ4 545 aaKnown RBP15.72■□□□□ 0.11
USP4-203ENST00000415188 MCOLN2Q8IZK6 566 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 ZNF516Q92618 1163 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 SETD4Q9NVD3 440 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 RBAKQ9NYW8 714 aaPredicted RBP15.72■□□□□ 0.11
USP4-203ENST00000415188 LCMT1Q9UIC8 334 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 CNTN6Q9UQ52 1028 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 RRP15Q9Y3B9 282 aaKnown RBP15.72■□□□□ 0.11
USP4-203ENST00000415188 NR2E1Q9Y466 385 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 PTPRSQ13332 1948 aa15.72■□□□□ 0.11
USP4-203ENST00000415188 SPTBN5Q9NRC6 3674 aaKnown RBP15.72■□□□□ 0.11
USP4-203ENST00000415188 LCHNA4D1U4 455 aa15.71■□□□□ 0.11
USP4-203ENST00000415188 LRRIQ4A6NIV6 560 aa15.71■□□□□ 0.11
USP4-203ENST00000415188 ATMINO43313 823 aaPredicted RBP15.71■□□□□ 0.11
USP4-203ENST00000415188 NUDT17P0C025 328 aa15.71■□□□□ 0.11
USP4-203ENST00000415188 MARCKSL1P49006 195 aa15.71■□□□□ 0.11
USP4-203ENST00000415188 TAP1Q03518 808 aa15.71■□□□□ 0.11
USP4-203ENST00000415188 CUL2Q13617 745 aa15.71■□□□□ 0.11
USP4-203ENST00000415188 TDRD10Q5VZ19 366 aaKnown RBP15.71■□□□□ 0.11
USP4-203ENST00000415188 SH2D3CQ8N5H7 860 aa15.71■□□□□ 0.11
USP4-203ENST00000415188 LRRC19Q9H756 370 aa15.71■□□□□ 0.11
USP4-203ENST00000415188 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.71■□□□□ 0.11
USP4-203ENST00000415188 GSTTP1A0A1W2PQM5 241 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 FSCN2O14926 492 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 TLL1O43897 1013 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 CLTAP09496 248 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 CTSHP09668 335 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 PYGMP11217 842 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 COILP38432 576 aaPredicted RBP15.71■□□□□ 0.1
USP4-203ENST00000415188 NSFP46459 744 aaKnown RBP15.71■□□□□ 0.1
USP4-203ENST00000415188 CDR1P51861 262 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 NLRP11P59045 1033 aaKnown RBP15.71■□□□□ 0.1
USP4-203ENST00000415188 SLMAPQ14BN4 828 aa15.71■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms