RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 PAX3P23760 479 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 SSTR3P32745 418 aaPredicted RBP7.07□□□□□ -1.28
VPS41-204ENST00000413141 CDH5P33151 784 aaPredicted RBP7.07□□□□□ -1.28
VPS41-204ENST00000413141 NSFP46459 744 aaKnown RBP7.07□□□□□ -1.28
VPS41-204ENST00000413141 GATMP50440 423 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 PAN2Q504Q3 1202 aaKnown RBP7.07□□□□□ -1.28
VPS41-204ENST00000413141 SGO2Q562F6 1265 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 ZNF569Q5MCW4 686 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 ACAD10Q6JQN1 1059 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 MFSD5Q6N075 450 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 PPP1R2P3Q6NXS1 205 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 CD300LGQ6UXG3 332 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 MON1BQ7L1V2 547 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 OSTM1Q86WC4 334 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 ZNF280BQ86YH2 543 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 COLGALT2Q8IYK4 626 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 ABI1Q8IZP0 508 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 RNF10Q8N5U6 811 aaKnown RBP7.07□□□□□ -1.28
VPS41-204ENST00000413141 C1orf131Q8NDD1 294 aaKnown RBP7.07□□□□□ -1.28
VPS41-204ENST00000413141 TRIM58Q8NG06 486 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 OR6B3Q8NGW1 331 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 HASPINQ8TF76 798 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 RSPH1Q8WYR4 309 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 RFFLQ8WZ73 363 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 ZNF592Q92610 1267 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 RABGGTAQ92696 567 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 ZNF653Q96CK0 615 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 ARHGEF26Q96DR7 871 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 CYFIP2Q96F07 1278 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 TRIM11Q96F44 468 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 SENP8Q96LD8 212 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 CASD1Q96PB1 797 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 NOX5Q96PH1 765 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 ALS2CR12Q96Q35 445 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 MRPL9Q9BYD2 267 aaKnown RBP7.07□□□□□ -1.28
VPS41-204ENST00000413141 PDCL3Q9H2J4 239 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 SNX25Q9H3E2 840 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 DPEP3Q9H4B8 488 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 KANSL3Q9P2N6 904 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 GTF3C4Q9UKN8 822 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 LRFN2Q9ULH4 789 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 STXBP5LQ9Y2K9 1186 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 PAXBP1Q9Y5B6 917 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 PCDHGC5Q9Y5F6 944 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 TTC3P53804 2025 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 GRID2IPA4D2P6 1211 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 A8MXQ7 604 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 F8W810 466 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 M0QYV0 167 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 M0QZQ0 153 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 GABRDO14764 452 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 ATMINO43313 823 aaPredicted RBP7.06□□□□□ -1.28
VPS41-204ENST00000413141 BUB1O43683 1085 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 B3GAT3O94766 335 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 MICAL2O94851 1124 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 ITGB1P05556 798 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 PFKMP08237 780 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 FAM163BP0C2L3 166 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 MYBL1P10243 752 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 ODC1P11926 461 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 CASQ1P31415 396 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 BRCC3P46736 316 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 RNASELQ05823 741 aaKnown RBP7.06□□□□□ -1.28
VPS41-204ENST00000413141 PTP4A2Q12974 167 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 IKBKEQ14164 716 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 TCEAL1Q15170 157 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 STILQ15468 1287 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 GOLGA7BQ2TAP0 167 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 TIGD5Q53EQ6 642 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 WSCD1Q658N2 575 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 DENND1BQ6P3S1 775 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 DCLRE1AQ6PJP8 1040 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 LCLAT1Q6UWP7 414 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 DSTYKQ6XUX3 929 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS41-204ENST00000413141 MMS22LQ6ZRQ5 1243 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 ACOT1Q86TX2 421 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 PHF13Q86YI8 300 aaPredicted RBP7.06□□□□□ -1.28
VPS41-204ENST00000413141 RHOT2Q8IXI1 618 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 MCOLN2Q8IZK6 566 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 TMEM86AQ8N2M4 240 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 LRRC43Q8N309 656 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 TMEM199Q8N511 208 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 TMEM35BQ8NCS4 154 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 KIF18AQ8NI77 898 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 SPATA18Q8TC71 538 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 CPA5Q8WXQ8 436 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 SUSD3Q96L08 255 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 HEXIM2Q96MH2 286 aaKnown RBP7.06□□□□□ -1.28
VPS41-204ENST00000413141 NAPGQ99747 312 aaPredicted RBP7.06□□□□□ -1.28
VPS41-204ENST00000413141 C11orf70Q9BRQ4 267 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 ZNF518BQ9C0D4 1074 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 LHX5Q9H2C1 402 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 OSGEPQ9NPF4 335 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 FAM49BQ9NUQ9 324 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 PCDH10Q9P2E7 1040 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 DNAJB4Q9UDY4 337 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 TSPAN16Q9UKR8 245 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 KIAA1257Q9ULG3 409 aa7.06□□□□□ -1.28
VPS41-204ENST00000413141 COG5Q9UP83 839 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms