RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 TAS2R40P59535 323 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 TAGLNQ01995 201 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 KLC1Q07866 573 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 IKQ13123 557 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 ZRSR2Q15696 482 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SHROOM1Q2M3G4 852 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 TFDP3Q5H9I0 405 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SH2D5Q6ZV89 423 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 NLRP9Q7RTR0 991 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 PPIL6Q8IXY8 311 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 NLGN1Q8N2Q7 840 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 KIF2BQ8N4N8 673 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 RDH13Q8NBN7 331 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 UHMK1Q8TAS1 419 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 MGARPQ8TDB4 240 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 ATG4AQ8WYN0 398 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 GPRASP2Q96D09 838 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 NR1H4Q96RI1 486 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 NUDCD1Q96RS6 583 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 FAM192AQ9GZU8 254 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 C1orf21Q9H246 121 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 FAM124BQ9H5Z6 455 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 CNTN3Q9P232 1028 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 STX18Q9P2W9 335 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 GRID1Q9ULK0 1009 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SORCS3Q9UPU3 1222 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SSX2IPQ9Y2D8 614 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 PPME1Q9Y570 386 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 TISP43B9A030 160 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 RIMBP2O15034 1052 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 WDR46O15213 610 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SLC16A4O15374 487 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 DGAT1O75907 488 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 KRT15P19012 456 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 ATP4AP20648 1035 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 RPA3P35244 121 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 CDKN2BP42772 138 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 ETV4P43268 484 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 PTDSS1P48651 473 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 NEK3P51956 506 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 PEX3P56589 373 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 MRPS9P82933 396 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SPP2Q13103 211 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SNX1Q13596 522 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 CUL2Q13617 745 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 TMED2Q15363 201 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 PKN2Q16513 984 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 WDR44Q5JSH3 913 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SLFN12LQ6IEE8 588 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SPOCD1Q6ZMY3 1216 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 FAM83AQ86UY5 434 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 TRIM42Q8IWZ5 723 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 ARHGAP24Q8N264 748 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 NAT8LQ8N9F0 302 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SMC1BQ8NDV3 1235 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 C9orf72Q96LT7 481 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 UIMC1Q96RL1 719 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 OSBPL1AQ9BXW6 950 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 TMX4Q9H1E5 349 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 VCXQ9H320 206 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 DENND2DQ9H6A0 471 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SAYSD1Q9NPB0 183 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 KMT5AQ9NQR1 393 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 NKX1-2Q9UD57 310 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 ZFP69BQ9UJL9 534 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF180Q9UJW8 692 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 CNTNAP1P78357 1384 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 DENND3A2RUS2 1198 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 GDF11O95390 407 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 PECAM1P16284 738 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 CA4P22748 312 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 EIF4BP23588 611 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 CAP2P40123 477 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 MAGEA6P43360 314 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SH3BGRP55822 239 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SNAP25P60880 206 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 CDK16Q00536 496 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 CNTN2Q02246 1040 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 DNAJC3Q13217 504 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 MTMR1Q13613 665 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 PRKD1Q15139 912 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SLC1A5Q15758 541 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 WDR72Q3MJ13 1102 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 STXBP5Q5T5C0 1151 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 WDR78Q5VTH9 848 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 HHATQ5VTY9 493 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 PLA2G4FQ68DD2 849 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 LONP2Q86WA8 852 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 THNSL1Q8IYQ7 743 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 ZSWIM2Q8NEG5 633 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 DCAKDQ8WVC6 231 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 DNAJC9Q8WXX5 260 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF516Q92618 1163 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 NSL1Q96IY1 281 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 C7orf26Q96N11 449 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 TRIM55Q9BYV6 548 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 SYNCQ9H7C4 482 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 KANSL3Q9P2N6 904 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 TRIM33Q9UPN9 1127 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms