RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ACTL9Q8TC94 416 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 ANKRD36BP1Q96IX9 119 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 CXCL16Q9H2A7 254 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 LRRC19Q9H756 370 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 C17orf75Q9HAS0 396 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 SLC40A1Q9NP59 571 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 PDLIM7Q9NR12 457 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 HOMER3Q9NSC5 361 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 PNMA3Q9UL41 463 aa14.13□□□□□ -0.15
VPS54-203ENST00000409558 IRX4P78413 519 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 OTUD4Q01804 1114 aaKnown RBP14.12□□□□□ -0.15
VPS54-203ENST00000409558 KIZQ2M2Z5 673 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 CTAGE3PQ8IX95 158 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 PIWIL1Q96J94 861 aaKnown RBP14.12□□□□□ -0.15
VPS54-203ENST00000409558 TRAIPQ9BWF2 469 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 MAGEB5Q9BZ81 275 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 LDHAP00338 332 aaKnown RBP14.12□□□□□ -0.15
VPS54-203ENST00000409558 PDGFRBP09619 1106 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 CA4P22748 312 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 ARL2P36404 184 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 NEDD9Q14511 834 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 PKN2Q16513 984 aaKnown RBP14.12□□□□□ -0.15
VPS54-203ENST00000409558 KCNV1Q6PIU1 500 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 SEC14L1Q92503 715 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 CPXM1Q96SM3 734 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 NIF3L1Q9GZT8 377 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 KIAA1586Q9HCI6 787 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 KLK14Q9P0G3 267 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 CNTNAP2Q9UHC6 1331 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 AVILO75366 819 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 ZNF252P-AS1Q0IIN9 211 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 OVGP1Q12889 678 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 CNGA2Q16280 664 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 ZNF449Q6P9G9 518 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 GRK7Q8WTQ7 553 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 TLCD1Q96CP7 247 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 MMP19Q99542 508 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 DCTN4Q9UJW0 460 aa14.12□□□□□ -0.15
VPS54-203ENST00000409558 A0A1W2PPM1 405 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 GPR25O00155 361 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 ITIH2P19823 946 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 IL1R2P27930 398 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 SCTRP47872 440 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 RABGGTBP53611 331 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 ENOSF1Q7L5Y1 443 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.11□□□□□ -0.15
VPS54-203ENST00000409558 RUNDC3BQ96NL0 473 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 CYTH4Q9UIA0 394 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 CHMP2BQ9UQN3 213 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 H7C0C1 242 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 OGTO15294 1046 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 CYP1A1P04798 512 aaPredicted RBP14.11□□□□□ -0.15
VPS54-203ENST00000409558 INSRRP14616 1297 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 ATP5OP48047 213 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 ANKRD22Q5VYY1 191 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 JADE1Q6IE81 842 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 LBX2Q6XYB7 198 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 VTI1AQ96AJ9 217 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 LENG1Q96BZ8 264 aaPredicted RBP14.11□□□□□ -0.15
VPS54-203ENST00000409558 TRIM56Q9BRZ2 755 aaKnown RBP14.11□□□□□ -0.15
VPS54-203ENST00000409558 TXLNGYQ9BZA5 131 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 E2F8A0AVK6 867 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 LACTBL1A8MY62 500 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 MSCO60682 206 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 AGTP01019 485 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 GRM1Q13255 1194 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 SPOCD1Q6ZMY3 1216 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 RDM1Q8NG50 284 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.11□□□□□ -0.15
VPS54-203ENST00000409558 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.11□□□□□ -0.15
VPS54-203ENST00000409558 ACO2Q99798 780 aaKnown RBP14.11□□□□□ -0.15
VPS54-203ENST00000409558 CCDC77Q9BR77 488 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 IP6K2Q9UHH9 426 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 SCINQ9Y6U3 715 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 LAMA2P24043 3122 aaKnown RBP14.11□□□□□ -0.15
VPS54-203ENST00000409558 H0YCG3 227 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 UBOX5O94941 541 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 AFG1LQ8WV93 481 aa14.11□□□□□ -0.15
VPS54-203ENST00000409558 MAK16Q9BXY0 300 aaKnown RBP14.11□□□□□ -0.15
VPS54-203ENST00000409558 MYH9P35579 1960 aaKnown RBP14.11□□□□□ -0.15
VPS54-203ENST00000409558 TCRBV7S3A2A0A539 114 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 TP73O15350 636 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 TJP3O95049 919 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 NUDT17P0C025 328 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 TBXAS1P24557 533 aaPredicted RBP14.1□□□□□ -0.15
VPS54-203ENST00000409558 RDXP35241 583 aaKnown RBP14.1□□□□□ -0.15
VPS54-203ENST00000409558 METTL7BQ6UX53 244 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 KIAA0319LQ8IZA0 1049 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 WDTC1Q8N5D0 677 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 SLITRK1Q96PX8 696 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 CEP41Q9BYV8 373 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 CNOT10Q9H9A5 744 aaKnown RBP14.1□□□□□ -0.15
VPS54-203ENST00000409558 MAP3K20Q9NYL2 800 aaKnown RBP14.1□□□□□ -0.15
VPS54-203ENST00000409558 CACNG4Q9UBN1 327 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 A6NNZ2 444 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 FZD9O00144 591 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 ASS1P00966 412 aaKnown RBP14.1□□□□□ -0.15
VPS54-203ENST00000409558 ADCYAP1R1P41586 468 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 MMP13P45452 471 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 YARSP54577 528 aaKnown RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms