RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 EMC1Q8N766 993 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 SLAIN1Q8ND83 568 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 TPCN2Q8NHX9 752 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 NXF3Q9H4D5 531 aaKnown RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 UBN1Q9NPG3 1134 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 AAASQ9NRG9 546 aa9.58□□□□□ -0.88
LIG4-202ENST00000405925 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 KIAA0100Q14667 2235 aaKnown RBP9.58□□□□□ -0.88
LIG4-202ENST00000405925 GPR25O00155 361 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 ACSL3O95573 720 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 INHBAP08476 426 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 ATP1A2P50993 1020 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 CLCN6P51797 869 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 EPHB1P54762 984 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 KCNMA1Q12791 1236 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 TBX2Q13207 712 aaPredicted RBP9.57□□□□□ -0.88
LIG4-202ENST00000405925 SEPT6Q14141 434 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 BTG3Q14201 252 aaPredicted RBP9.57□□□□□ -0.88
LIG4-202ENST00000405925 SNX17Q15036 470 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 ZACNQ401N2 412 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 COBLL1Q53SF7 1204 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 FBXO38Q6PIJ6 1188 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 ILDR2Q71H61 639 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 NT5DC4Q86YG4 428 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 CCDC13Q8IYE1 715 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 ATP2A3Q93084 1043 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 OSBPL8Q9BZF1 889 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 KLC2Q9H0B6 622 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 KANSL3Q9P2N6 904 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 MORF4L1Q9UBU8 362 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 TJP2Q9UDY2 1190 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 TSPAN16Q9UKR8 245 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 GRID2IPA4D2P6 1211 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 GOLGA8MH3BSY2 632 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 LHX1P48742 406 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 YWHAHQ04917 246 aaPredicted RBP9.57□□□□□ -0.88
LIG4-202ENST00000405925 TDRD10Q5VZ19 366 aaKnown RBP9.57□□□□□ -0.88
LIG4-202ENST00000405925 PHLDB3Q6NSJ2 640 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 FAM118BQ9BPY3 351 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 TSPYL2Q9H2G4 693 aaPredicted RBP9.57□□□□□ -0.88
LIG4-202ENST00000405925 KRT82Q9NSB4 513 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 RSPH14Q9UHP6 348 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 COL1A2P08123 1366 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 CALCAP01258 141 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 ARL2P36404 184 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 ALDH1A3P47895 512 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 GPS1Q13098 491 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 SKIV2LQ15477 1246 aaKnown RBP9.57□□□□□ -0.88
LIG4-202ENST00000405925 GLE1Q53GS7 698 aaKnown RBP9.57□□□□□ -0.88
LIG4-202ENST00000405925 ZNF280DQ6N043 979 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 DAW1Q8N136 415 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 CCDC110Q8TBZ0 833 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 CCDC68Q9H2F9 335 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 DDIT4Q9NX09 232 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 SRRDQ9UH36 339 aa9.57□□□□□ -0.88
LIG4-202ENST00000405925 DDX3XO00571 662 aaKnown RBP eCLIP9.56□□□□□ -0.88
LIG4-202ENST00000405925 MAP3K7CLP57077 242 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 PDE1BQ01064 536 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 ADCY1Q08828 1119 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 AP1B1Q10567 949 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 CUL1Q13616 776 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 GRB14Q14449 540 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 CFAP157Q5JU67 520 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 FAM171A1Q5VUB5 890 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 GSDMBQ8TAX9 411 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 PYROXD1Q8WU10 500 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 PPP2R3CQ969Q6 453 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 SENP8Q96LD8 212 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 SMYD3Q9H7B4 428 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 DDX20Q9UHI6 824 aaKnown RBP9.56□□□□□ -0.88
LIG4-202ENST00000405925 NDUFAB1O14561 156 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 HGSO14964 777 aaPredicted RBP9.56□□□□□ -0.88
LIG4-202ENST00000405925 MAPK13O15264 365 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 URODP06132 367 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 EIF3EP60228 445 aaKnown RBP9.56□□□□□ -0.88
LIG4-202ENST00000405925 NFE2Q16621 373 aaPredicted RBP9.56□□□□□ -0.88
LIG4-202ENST00000405925 CENPUQ71F23 418 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 TMC7Q7Z402 723 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 ZNF467Q7Z7K2 595 aaPredicted RBP9.56□□□□□ -0.88
LIG4-202ENST00000405925 NOP9Q86U38 636 aaKnown RBP9.56□□□□□ -0.88
LIG4-202ENST00000405925 WHAMMQ8TF30 809 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 COG1Q8WTW3 980 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 PGLYRP2Q96PD5 576 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 FAM105AQ9NUU6 356 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 TNRC6CQ9HCJ0 1690 aaKnown RBP9.56□□□□□ -0.88
LIG4-202ENST00000405925 MYH1P12882 1939 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 I3L4J1 428 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 APOL1O14791 398 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 APLP1P51693 650 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 ROR1Q01973 937 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 SLMAPQ14BN4 828 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 ZBTB41Q5SVQ8 909 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 NYAP1Q6ZVC0 841 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 MIB1Q86YT6 1006 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 C12orf56Q8IXR9 622 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 RCOR2Q8IZ40 523 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 ANKS4BQ8N8V4 417 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 PDCD6IPQ8WUM4 868 aaKnown RBP9.56□□□□□ -0.88
LIG4-202ENST00000405925 SAYSD1Q9NPB0 183 aa9.56□□□□□ -0.88
LIG4-202ENST00000405925 EHD2Q9NZN4 543 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms