RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 GMEB2Q9UKD1 530 aa30.8■■■□□ 2.52
HMGB1-205ENST00000399494 DERAQ9Y315 318 aa30.8■■■□□ 2.52
HMGB1-205ENST00000399494 MYMKA6NI61 221 aa30.79■■■□□ 2.52
HMGB1-205ENST00000399494 SLC38A8A6NNN8 435 aa30.79■■■□□ 2.52
HMGB1-205ENST00000399494 ANKRD63C9JTQ0 380 aa30.79■■■□□ 2.52
HMGB1-205ENST00000399494 FGF19O95750 216 aa30.79■■■□□ 2.52
HMGB1-205ENST00000399494 NFICP08651 508 aa30.79■■■□□ 2.52
HMGB1-205ENST00000399494 LRRC27Q9C0I9 530 aa30.79■■■□□ 2.52
HMGB1-205ENST00000399494 RBM12Q9NTZ6 932 aaKnown RBP30.79■■■□□ 2.52
HMGB1-205ENST00000399494 MYBPHLA2RUH7 354 aa30.78■■■□□ 2.52
HMGB1-205ENST00000399494 POLR2DO15514 142 aaKnown RBP30.78■■■□□ 2.52
HMGB1-205ENST00000399494 GABRR2P28476 465 aa30.78■■■□□ 2.52
HMGB1-205ENST00000399494 NMT1P30419 496 aaKnown RBP30.78■■■□□ 2.52
HMGB1-205ENST00000399494 LMNB2Q03252 620 aa30.78■■■□□ 2.52
HMGB1-205ENST00000399494 TMEM132DQ14C87 1099 aa30.78■■■□□ 2.52
HMGB1-205ENST00000399494 GPR158Q5T848 1215 aa30.78■■■□□ 2.52
HMGB1-205ENST00000399494 ITIH5Q86UX2 942 aa30.78■■■□□ 2.52
HMGB1-205ENST00000399494 PYM1Q9BRP8 204 aaKnown RBP30.78■■■□□ 2.52
HMGB1-205ENST00000399494 OBP2AQ9NY56 170 aa30.78■■■□□ 2.52
HMGB1-205ENST00000399494 RAB23Q9ULC3 237 aa30.78■■■□□ 2.52
HMGB1-205ENST00000399494 USP18Q9UMW8 372 aa30.78■■■□□ 2.52
HMGB1-205ENST00000399494 DPYSL4O14531 572 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 WEE1P30291 646 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 TUFMP49411 452 aaKnown RBP30.77■■■□□ 2.52
HMGB1-205ENST00000399494 ACOT2P49753 483 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 LRRC32Q14392 662 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 E2F4Q16254 413 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 LPAL2Q16609 132 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 ARHGAP29Q52LW3 1261 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 ADALQ6DHV7 355 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 LAIR1Q6GTX8 287 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 TXNDC11Q6PKC3 985 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 RALGPS2Q86X27 583 aaPredicted RBP30.77■■■□□ 2.52
HMGB1-205ENST00000399494 ZFYVE19Q96K21 471 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 ZCWPW1Q9H0M4 648 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 TNMDQ9H2S6 317 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 ASB7Q9H672 318 aa30.77■■■□□ 2.52
HMGB1-205ENST00000399494 SPECC1L-ADORA2AF8WAN1 911 aa30.76■■■□□ 2.51
HMGB1-205ENST00000399494 IDEP14735 1019 aa30.76■■■□□ 2.51
HMGB1-205ENST00000399494 AMPD3Q01432 767 aa30.76■■■□□ 2.51
HMGB1-205ENST00000399494 SLC39A12Q504Y0 691 aa30.76■■■□□ 2.51
HMGB1-205ENST00000399494 ZC2HC1CQ53FD0 456 aaPredicted RBP30.76■■■□□ 2.51
HMGB1-205ENST00000399494 ARHGAP15Q53QZ3 475 aa30.76■■■□□ 2.51
HMGB1-205ENST00000399494 TTC8Q8TAM2 541 aa30.76■■■□□ 2.51
HMGB1-205ENST00000399494 LPIN3Q9BQK8 851 aa30.76■■■□□ 2.51
HMGB1-205ENST00000399494 GTSE1Q9NYZ3 720 aa30.76■■■□□ 2.51
HMGB1-205ENST00000399494 STYXL1Q9Y6J8 313 aa30.76■■■□□ 2.51
HMGB1-205ENST00000399494 NCOR2Q9Y618 2525 aa30.76■■■□□ 2.51
HMGB1-205ENST00000399494 TISP43B9A030 160 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 HRO43593 1189 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 PAPSS2O95340 614 aaPredicted RBP30.75■■■□□ 2.51
HMGB1-205ENST00000399494 GAP43P17677 238 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 CTHP32929 405 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 ABCD1P33897 745 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 CDR1P51861 262 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 DMWDQ09019 674 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 DGKKQ5KSL6 1271 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 TASP1Q9H6P5 420 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 MAGEF1Q9HAY2 307 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 IL21Q9HBE4 155 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 GDPD2Q9HCC8 539 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 DSEQ9UL01 958 aa30.75■■■□□ 2.51
HMGB1-205ENST00000399494 CHURC1-FNTBB4DL54 471 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 K7ESF4 209 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 CYB561D2O14569 222 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 ATF6P18850 670 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 FNTBP49356 437 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 SPEM2Q0P670 501 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 LRRTM3Q86VH5 581 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 SFR1Q86XK3 245 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 FAM200AQ8TCP9 573 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 DNAJC19Q96DA6 116 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 SEPT5Q99719 369 aaPredicted RBP30.74■■■□□ 2.51
HMGB1-205ENST00000399494 ST6GALNAC4Q9H4F1 302 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 SEL1LQ9UBV2 794 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 CDV3Q9UKY7 258 aaKnown RBP30.74■■■□□ 2.51
HMGB1-205ENST00000399494 C2CD2Q9Y426 696 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 ANK1P16157 1881 aa30.74■■■□□ 2.51
HMGB1-205ENST00000399494 PRAMEF12O95522 483 aa30.73■■■□□ 2.51
HMGB1-205ENST00000399494 RETP07949 1114 aa30.73■■■□□ 2.51
HMGB1-205ENST00000399494 CMA1P23946 247 aa30.73■■■□□ 2.51
HMGB1-205ENST00000399494 CYP4F8P98187 520 aa30.73■■■□□ 2.51
HMGB1-205ENST00000399494 SLFN12LQ6IEE8 588 aa30.73■■■□□ 2.51
HMGB1-205ENST00000399494 PRR23BQ6ZRT6 265 aa30.73■■■□□ 2.51
HMGB1-205ENST00000399494 Q6ZS52 159 aa30.73■■■□□ 2.51
HMGB1-205ENST00000399494 KBTBD4Q9NVX7 518 aa30.73■■■□□ 2.51
HMGB1-205ENST00000399494 C2orf42Q9NWW7 574 aa30.73■■■□□ 2.51
HMGB1-205ENST00000399494 DPP3Q9NY33 737 aa30.73■■■□□ 2.51
HMGB1-205ENST00000399494 AGO2Q9UKV8 859 aaKnown RBP30.73■■■□□ 2.51
HMGB1-205ENST00000399494 CIZ1Q9ULV3 898 aaPredicted RBP30.73■■■□□ 2.51
HMGB1-205ENST00000399494 A0A1B0GVL5 298 aa30.72■■■□□ 2.51
HMGB1-205ENST00000399494 POU5F1Q01860 360 aaKnown RBP30.72■■■□□ 2.51
HMGB1-205ENST00000399494 SIM2Q14190 667 aaPredicted RBP30.72■■■□□ 2.51
HMGB1-205ENST00000399494 PON2Q15165 354 aa30.72■■■□□ 2.51
HMGB1-205ENST00000399494 MGAT5BQ3V5L5 792 aa30.72■■■□□ 2.51
HMGB1-205ENST00000399494 CRELD2Q6UXH1 353 aaPredicted RBP30.72■■■□□ 2.51
HMGB1-205ENST00000399494 METTL23Q86XA0 190 aa30.72■■■□□ 2.51
HMGB1-205ENST00000399494 CCDC65Q8IXS2 484 aa30.72■■■□□ 2.51
HMGB1-205ENST00000399494 CEP57L1Q8IYX8 460 aa30.72■■■□□ 2.51
HMGB1-205ENST00000399494 THEM5Q8N1Q8 247 aa30.72■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms