RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ACO1P21399 889 aaKnown RBP15.13■□□□□ 0.01
SKA1-202ENST00000398452 FECHP22830 423 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 WARSP23381 471 aaKnown RBP15.13■□□□□ 0.01
SKA1-202ENST00000398452 PCSK1P29120 753 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 BRCC3P46736 316 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 KIF11P52732 1056 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 NDST1P52848 882 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 BCAR1P56945 870 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 INCA1Q0VD86 236 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 PDCD11Q14690 1871 aaKnown RBP15.13■□□□□ 0.01
SKA1-202ENST00000398452 BMS1Q14692 1282 aaKnown RBP15.13■□□□□ 0.01
SKA1-202ENST00000398452 STILQ15468 1287 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 SOWAHAQ2M3V2 549 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 TIGD5Q53EQ6 642 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 SGO2Q562F6 1265 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 SCARA3Q6AZY7 606 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 PPP1R2P3Q6NXS1 205 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 WDR59Q6PJI9 974 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 SLC47A2Q86VL8 602 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 CRIPAKQ8N1N5 446 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 VWCEQ96DN2 955 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 TMEM169Q96HH4 297 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 SUSD3Q96L08 255 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 MRPL45Q9BRJ2 306 aaKnown RBP15.13■□□□□ 0.01
SKA1-202ENST00000398452 PAAF1Q9BRP4 392 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 KCNF1Q9H3M0 494 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 ARHGAP20Q9P2F6 1191 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 DNAJB4Q9UDY4 337 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 ADAM28Q9UKQ2 775 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 L1RE1Q9UN81 338 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 PCDHB12Q9Y5F1 795 aa15.13■□□□□ 0.01
SKA1-202ENST00000398452 TDRD15B5MCY1 1934 aaKnown RBP15.13■□□□□ 0.01
SKA1-202ENST00000398452 SYN3O14994 580 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 TLL1O43897 1013 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 NDUFA10O95299 355 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 GALTP07902 379 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 VDRP11473 427 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 TYMPP19971 482 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 DNAJB2P25686 324 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 CLCN1P35523 988 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 PPM1AP35813 382 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 SLC11A1P49279 550 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 CDR2Q01850 454 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 C10orf76Q5T2E6 689 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 TAF3Q5VWG9 929 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 WSCD1Q658N2 575 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 E4F1Q66K89 784 aaPredicted RBP15.12■□□□□ 0.01
SKA1-202ENST00000398452 HGSNATQ68CP4 663 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 TRIM72Q6ZMU5 477 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 KIAA1328Q86T90 577 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 HERC6Q8IVU3 1022 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 PDCL2Q8N4E4 241 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 UBR7Q8N806 425 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 ZNF689Q96CS4 500 aaPredicted RBP15.12■□□□□ 0.01
SKA1-202ENST00000398452 RAD9AQ99638 391 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 SDCBP2Q9H190 292 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 HESX1Q9UBX0 185 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 ADAMTS1Q9UHI8 967 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 CNTN6Q9UQ52 1028 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 ZKSCAN5Q9Y2L8 839 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 CUL9Q8IWT3 2517 aa15.12■□□□□ 0.01
SKA1-202ENST00000398452 EIF3CLB5ME19 914 aaKnown RBP15.11■□□□□ 0.01
SKA1-202ENST00000398452 M0QZQ0 153 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 PLEKP08567 350 aaPredicted RBP15.11■□□□□ 0.01
SKA1-202ENST00000398452 FOSL2P15408 326 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 PBX2P40425 430 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 AARSP49588 968 aaKnown RBP eCLIP15.11■□□□□ 0.01
SKA1-202ENST00000398452 SLC8A3P57103 927 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 TSPY1Q01534 308 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 YWHAHQ04917 246 aaPredicted RBP15.11■□□□□ 0.01
SKA1-202ENST00000398452 SLC18A3Q16572 532 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 OVOS1Q6IE37 1185 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 KIAA1841Q6NSI8 718 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 FUT10Q6P4F1 479 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 KCNT2Q6UVM3 1135 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 ZNF571Q7Z3V5 609 aaPredicted RBP15.11■□□□□ 0.01
SKA1-202ENST00000398452 CEP57Q86XR8 500 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 TMEM139Q8IV31 216 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.11■□□□□ 0.01
SKA1-202ENST00000398452 MSANTD4Q8NCY6 345 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 C3orf58Q8NDZ4 430 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 MAFAQ8NHW3 353 aaPredicted RBP15.11■□□□□ 0.01
SKA1-202ENST00000398452 EPS8L1Q8TE68 723 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 EIF3CQ99613 913 aaKnown RBP15.11■□□□□ 0.01
SKA1-202ENST00000398452 DDX43Q9NXZ2 648 aaKnown RBP15.11■□□□□ 0.01
SKA1-202ENST00000398452 STK39Q9UEW8 545 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 RWDD3Q9Y3V2 267 aa15.11■□□□□ 0.01
SKA1-202ENST00000398452 GOLGA6L9A6NEM1 432 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 NT5C1B-RDH14C9J2C7 533 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 H7C4K7 107 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 I3L4J1 428 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 PDGFRBP09619 1106 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 HOXB1P14653 301 aaPredicted RBP15.1■□□□□ 0.01
SKA1-202ENST00000398452 ZNF132P52740 706 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 RAD23BP54727 409 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 KRT17Q04695 432 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 GRIN2CQ14957 1233 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 CCDC122Q5T0U0 273 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 FAM171A1Q5VUB5 890 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 RAD9BQ6WBX8 426 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms