RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 SH2D3AQ9BRG2 576 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 TBC1D10AQ9BXI6 508 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 FHDC1Q9C0D6 1143 aaPredicted RBP10.53□□□□□ -0.72
COL17A1-203ENST00000393211 ACSS3Q9H6R3 686 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 XPNPEP1Q9NQW7 623 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 CYP26B1Q9NR63 512 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 GABBR1Q9UBS5 961 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 ZFP69BQ9UJL9 534 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 HAO1Q9UJM8 370 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 USTQ9Y2C2 406 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 FARP1Q9Y4F1 1045 aaPredicted RBP10.53□□□□□ -0.72
COL17A1-203ENST00000393211 SNCAIPQ9Y6H5 919 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 CLRN2A0PK11 232 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 KIF3CO14782 793 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 ZNF862O60290 1169 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 CCDC22O60826 627 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 DNAJC6O75061 913 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 ATP6V1C1P21283 382 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 TARSP26639 723 aaKnown RBP10.52□□□□□ -0.73
COL17A1-203ENST00000393211 MARK3P27448 753 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 CDH5P33151 784 aaPredicted RBP10.52□□□□□ -0.73
COL17A1-203ENST00000393211 CDKN2BP42772 138 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 MRPS35P82673 323 aaKnown RBP10.52□□□□□ -0.73
COL17A1-203ENST00000393211 PDIA2Q13087 525 aaKnown RBP10.52□□□□□ -0.73
COL17A1-203ENST00000393211 SLC1A5Q15758 541 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 SEPT7Q16181 437 aaKnown RBP10.52□□□□□ -0.73
COL17A1-203ENST00000393211 TSNAXIP1Q2TAA8 658 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 XKR3Q5GH77 459 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 DNAJC24Q6P3W2 148 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 LVRNQ6Q4G3 990 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 SAMD1Q6SPF0 538 aaPredicted RBP10.52□□□□□ -0.73
COL17A1-203ENST00000393211 NLRP9Q7RTR0 991 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 OTOAQ7RTW8 1153 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 TMEM35BQ8NCS4 154 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 ASAP3Q8TDY4 903 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 ZNF606Q8WXB4 792 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 ZNF341Q9BYN7 854 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 IMPG2Q9BZV3 1241 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 POLR3FQ9H1D9 316 aaPredicted RBP10.52□□□□□ -0.73
COL17A1-203ENST00000393211 APOBEC3GQ9HC16 384 aaKnown RBP10.52□□□□□ -0.73
COL17A1-203ENST00000393211 RAVER2Q9HCJ3 691 aaKnown RBP10.52□□□□□ -0.73
COL17A1-203ENST00000393211 PGAP2Q9UHJ9 254 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 RABGEF1Q9UJ41 708 aa10.52□□□□□ -0.73
COL17A1-203ENST00000393211 CTDP1Q9Y5B0 961 aaPredicted RBP10.52□□□□□ -0.73
COL17A1-203ENST00000393211 TESPA1A2RU30 521 aaPredicted RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 FAM155BO75949 473 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 NEBLO76041 1014 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 CALCAP01258 141 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 KRT7P08729 469 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 ACADSP16219 412 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 ATF7P17544 494 aaPredicted RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 EIF4BP23588 611 aaKnown RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 PAX7P23759 505 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 NOP14P78316 857 aaKnown RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 ADCY1Q08828 1119 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 GRIK3Q13003 919 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 WDR72Q3MJ13 1102 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 PPP1R15BQ5SWA1 713 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 FAM91A1Q658Y4 838 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 CDCA2Q69YH5 1023 aaPredicted RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 CIAPIN1Q6FI81 312 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 LLGL2Q6P1M3 1020 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 CLNKQ7Z7G1 428 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 PHLDB2Q86SQ0 1253 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 CHSY1Q86X52 802 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 THNSL1Q8IYQ7 743 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 CPXCR1Q8N123 301 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 ARMC2Q8NEN0 867 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 PYROXD1Q8WU10 500 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 NUDCD1Q96RS6 583 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 MAK16Q9BXY0 300 aaKnown RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 TRIM55Q9BYV6 548 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 GLIS2Q9BZE0 524 aaPredicted RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 MMADHCQ9H3L0 296 aaPredicted RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 TMEM134Q9H6X4 195 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 SLCO1B3Q9NPD5 702 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 RBAKQ9NYW8 714 aaPredicted RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 GRID1Q9ULK0 1009 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 STRIP2Q9ULQ0 834 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 PCDHGC3Q9UN70 934 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 MTO1Q9Y2Z2 717 aaKnown RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 IVNS1ABPQ9Y6Y0 642 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 A0A0B4J269 797 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 CCDC189A1A4V9 331 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 SGK1O00141 431 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 CLGNO14967 610 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 PPP1R12AO14974 1030 aaPredicted RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 SPAG6O75602 509 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 NR3C2P08235 984 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 CFHP08603 1231 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 KRT10P13645 584 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 KCNA2P16389 499 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 KRT4P19013 534 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 GJC1P36383 396 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 NAMPTP43490 491 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 RAD23BP54727 409 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 NLRP11P59045 1033 aaKnown RBP10.51□□□□□ -0.73
COL17A1-203ENST00000393211 GPX6P59796 221 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 ZNF252P-AS1Q0IIN9 211 aa10.51□□□□□ -0.73
COL17A1-203ENST00000393211 LBRQ14739 615 aaKnown RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms