RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 C10orf53Q8N6V4 93 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 ATP6V0D2Q8N8Y2 350 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 CNDP1Q96KN2 507 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 BATF3Q9NR55 127 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 KRT84Q9NSB2 600 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 F8W810 466 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 POLRMTO00411 1230 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 ANXA9O76027 345 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 CHI3L1P36222 383 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 SLC16A1P53985 500 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 ALDH6A1Q02252 535 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 LRRC36Q1X8D7 754 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 GALNT4Q8N4A0 578 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 ZFYVE28Q9HCC9 887 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 CRLS1Q9UJA2 301 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 EIF4E1BA6NMX2 242 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 PPP1R37O75864 691 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 RRM2P31350 389 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 KRR1Q13601 381 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 ATF7IP2Q5U623 682 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 CCT7Q99832 543 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 FRMD8Q9BZ67 464 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 ZCWPW1Q9H0M4 648 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 MANSC1Q9H8J5 431 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 ELP3Q9H9T3 547 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 WWOXQ9NZC7 414 aa13.33□□□□□ -0.28
CCDC88C-204ENST00000389857 SSU72P8A0A1W2PR75 194 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 EXTL3O43909 919 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 USP1O94782 785 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 PSMA4P25789 261 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 FDFT1P37268 417 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 PNPLA4P41247 253 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 PRIM2P49643 509 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 CPT1AP50416 773 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 ZNF438Q7Z4V0 828 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 IFNEQ86WN2 208 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 CYFIP2Q96F07 1278 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 TEX13BQ9BXU2 312 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 TMEM8AQ9HCN3 771 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 DBR1Q9UK59 544 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 C2orf81A6NN90 581 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 CCND1P24385 295 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 ST13P50502 369 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 SGMS1Q86VZ5 419 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 SLITRK1Q96PX8 696 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 RMND5AQ9H871 391 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 AAASQ9NRG9 546 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 MARCOQ9UEW3 520 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 TRMT6Q9UJA5 497 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 RSPH10B2B2RC85 870 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 RSPH10BP0C881 870 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 SLC2A3P11169 496 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 DCAF6Q58WW2 860 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 ERAP2Q6P179 960 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 SH3GL2Q99962 352 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 CCSER1Q9C0I3 900 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 DISP1Q96F81 1524 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 LRG1P02750 347 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 EPB42P16452 691 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 MAPK1P28482 360 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 PPIL6Q8IXY8 311 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 ZNF513Q8N8E2 541 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 CHMP2BQ9UQN3 213 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 GSG1L2A8MUP6 293 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 DARSP14868 501 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 VCLP18206 1134 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 NAB2Q15742 525 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 CCDC60Q8IWA6 550 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 RSPH1Q8WYR4 309 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 FAR2Q96K12 515 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 C10orf88Q9H8K7 445 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 RARBP10826 455 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 ODC1P11926 461 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 GALCP54803 685 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 MFSD4BQ5TF39 518 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 AGAP9Q5VTM2 703 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 NOTUMQ6P988 496 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 SHC4Q6S5L8 630 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 ANKRD49Q8WVL7 239 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 DEPDC7Q96QD5 511 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 HPS4Q9NQG7 708 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 GEMIN8Q9NWZ8 242 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 SLC25A13Q9UJS0 675 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 NRKQ7Z2Y5 1582 aa13.32□□□□□ -0.28
CCDC88C-204ENST00000389857 NFIBO00712 420 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 SRGNP10124 158 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 C10orf120Q5SQS8 335 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 TMEM154Q6P9G4 183 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 SEPT1Q8WYJ6 367 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 REEP2Q9BRK0 252 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 CAND2O75155 1236 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 CYLC2Q14093 348 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 POLD3Q15054 466 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 DGKDQ16760 1214 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 CCDC126Q96EE4 140 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 IL1RL2Q9HB29 575 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 MORC2Q9Y6X9 1032 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 ZNF185O15231 689 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 UPP2O95045 317 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 CTSHP09668 335 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms