RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 LHX5Q9H2C1 402 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 RSAD1Q9HA92 442 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 ST7Q9NRC1 585 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 STIM2Q9P246 746 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 AMFRQ9UKV5 643 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 PCNTO95613 3336 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 KPNA7A9QM74 516 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 HUS1O60921 280 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 EOMESO95936 686 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 CAPN2P17655 700 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 BRD2P25440 801 aaKnown RBP19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 MLH1P40692 756 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 CDH8P55286 799 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 PKN2Q16513 984 aaKnown RBP19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 EMBQ6PCB8 327 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 LRRC57Q8N9N7 239 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 AENQ8WTP8 325 aaKnown RBP19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 CYFIP2Q96F07 1278 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 DDX27Q96GQ7 796 aaKnown RBP19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 MIS12Q9H081 205 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 SDCBP2Q9H190 292 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 RNF216Q9NWF9 866 aaPredicted RBP19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 ADAM22Q9P0K1 906 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 STRIP2Q9ULQ0 834 aa19.31■□□□□ 0.68
CCDC88C-203ENST00000389856 POLR3GO15318 223 aaPredicted RBP19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 NCK2O43639 380 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 CAPN15O75808 1086 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 CDH5P33151 784 aaPredicted RBP19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 MTFR1Q15390 333 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 SCARA3Q6AZY7 606 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 C8orf74Q6P047 294 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 FBXO46Q6PJ61 603 aaPredicted RBP19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 TOP6BLQ8N6T0 577 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 DNAJC5GQ8N7S2 189 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 EIF1ADQ8N9N8 165 aaKnown RBP19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 APPL2Q8NEU8 664 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 ZNF564Q8TBZ8 553 aaPredicted RBP19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 CPA5Q8WXQ8 436 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 ARHGEF26Q96DR7 871 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 HEXIM2Q96MH2 286 aaKnown RBP19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 UROC1Q96N76 676 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 GAD1Q99259 594 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 NUP85Q9BW27 656 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 SNX25Q9H3E2 840 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 RGS18Q9NS28 235 aa19.3■□□□□ 0.68
CCDC88C-203ENST00000389856 ARHGEF37A1IGU5 675 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 ARL5CA6NH57 179 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 PTGESO14684 152 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 KIF4AO95239 1232 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 COL6A1P12109 1028 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 NDST1P52848 882 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 EPHB4P54760 987 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 SNX16P57768 344 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 GRIK3Q13003 919 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 CLUL1Q15846 466 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 CNGA2Q16280 664 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 SLC24A5Q71RS6 500 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 MON1BQ7L1V2 547 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 PASD1Q8IV76 773 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 IFT20Q8IY31 132 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 SLC4A11Q8NBS3 891 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 APBB2Q92870 758 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 TSPYL2Q9H2G4 693 aaPredicted RBP19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 DCDC2CA8MYV0 355 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 MIF4GDA9UHW6 222 aaKnown RBP19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 H3BQF6 201 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 FTCDO95954 541 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 TNNT3P45378 269 aaPredicted RBP19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 TAP1Q03518 808 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 TRAF7Q6Q0C0 670 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 AGMOQ6ZNB7 445 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 DNAAF5Q86Y56 855 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 ECHDC2Q86YB7 292 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 RNF169Q8NCN4 708 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 ACTRT1Q8TDG2 376 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 ZFP42Q96MM3 310 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 LRRC1Q9BTT6 524 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 ELOVL4Q9GZR5 314 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 OSGEPQ9NPF4 335 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 PARVAQ9NVD7 372 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 ZKSCAN7Q9P0L1 754 aaPredicted RBP19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 HPCAL4Q9UM19 191 aa19.29■□□□□ 0.68
CCDC88C-203ENST00000389856 CCDC66A2RUB6 948 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 BUB1BO60566 1050 aaPredicted RBP19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 MMP8P22894 467 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 GLB1LQ6UWU2 654 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 ERICH1Q86X53 443 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 OR6B3Q8NGW1 331 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 WHAMMQ8TF30 809 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 SEPT8Q92599 483 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 CAVIN3Q969G5 261 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 TNIP3Q96KP6 325 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 CRISPLD2Q9H0B8 497 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 CXCL16Q9H2A7 254 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 PRDM4Q9UKN5 801 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 SCN1AP35498 2009 aa19.28■□□□□ 0.68
CCDC88C-203ENST00000389856 MGEA5O60502 916 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 MYCP01106 439 aaPredicted RBP19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 CALCAP01258 141 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 CXCR5P32302 372 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms