RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 GPNMBQ14956 572 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 ICE2Q659A1 982 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 TTC19Q6DKK2 380 aaPredicted RBP13.23□□□□□ -0.29
CIITA-202ENST00000381835 GLYCTKQ8IVS8 523 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 TSEN2Q8NCE0 465 aaKnown RBP13.23□□□□□ -0.29
CIITA-202ENST00000381835 GSTCDQ8NEC7 633 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 EPS8L1Q8TE68 723 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 RABEP2Q9H5N1 569 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 RGS18Q9NS28 235 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 CISHQ9NSE2 258 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 GIT1Q9Y2X7 761 aa13.23□□□□□ -0.29
CIITA-202ENST00000381835 BUB1O43683 1085 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 SKIP12755 728 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 TNFAIP3P21580 790 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 RAP1GAPP47736 663 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 SCNN1GP51170 649 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 MYO1EQ12965 1108 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 ZNF394Q53GI3 561 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 C1orf53Q5VUE5 145 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 C9orf57Q5W0N0 161 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 SLC24A5Q71RS6 500 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 NOP9Q86U38 636 aaKnown RBP13.22□□□□□ -0.29
CIITA-202ENST00000381835 ECHDC2Q86YB7 292 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 LINC01599Q8WXQ3 324 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 CAVIN3Q969G5 261 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 PGBD4Q96DM1 585 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 NOX5Q96PH1 765 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 RSAD1Q9HA92 442 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 MIOSQ9NXC5 875 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 SALL4Q9UJQ4 1053 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 FAM169AQ9Y6X4 670 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 DDX3XO00571 662 aaKnown RBP eCLIP13.22□□□□□ -0.29
CIITA-202ENST00000381835 PJA2O43164 708 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 CPP00450 1065 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 THP07101 528 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 CYP11B1P15538 503 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 PDE6CP51160 858 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 CDH8P55286 799 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 LRRC26Q2I0M4 334 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 DNAAF5Q86Y56 855 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 RPUSD2Q8IZ73 545 aaKnown RBP13.22□□□□□ -0.29
CIITA-202ENST00000381835 LNX1Q8TBB1 728 aaPredicted RBP13.22□□□□□ -0.29
CIITA-202ENST00000381835 ARL8AQ96BM9 186 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 PPP1R10Q96QC0 940 aaKnown RBP13.22□□□□□ -0.29
CIITA-202ENST00000381835 AGPAT1Q99943 283 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 FTHL17Q9BXU8 183 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 WNT8AQ9H1J5 351 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 SMYD3Q9H7B4 428 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 VRTNQ9H8Y1 702 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 RBM12Q9NTZ6 932 aaKnown RBP13.22□□□□□ -0.29
CIITA-202ENST00000381835 TMEM39AQ9NV64 488 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 CACNG4Q9UBN1 327 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 INPP5FQ9Y2H2 1132 aa13.22□□□□□ -0.29
CIITA-202ENST00000381835 TANC1Q9C0D5 1861 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 C9IYK1 514 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 POMCP01189 267 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 P4HA1P13674 534 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 TNFRSF8P28908 595 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 GTF2A1P52655 376 aaPredicted RBP13.21□□□□□ -0.29
CIITA-202ENST00000381835 TNNC1P63316 161 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 CFAP221Q4G0U5 840 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 GLE1Q53GS7 698 aaKnown RBP13.21□□□□□ -0.29
CIITA-202ENST00000381835 PLEKHG4Q58EX7 1191 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 TTMPQ5BVD1 217 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 ALKBH5Q6P6C2 394 aaKnown RBP13.21□□□□□ -0.29
CIITA-202ENST00000381835 NECAB2Q7Z6G3 386 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 DEFB128Q7Z7B8 93 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 IFT20Q8IY31 132 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 RBBP8NLQ8NC74 664 aaPredicted RBP13.21□□□□□ -0.29
CIITA-202ENST00000381835 TSPAN18Q96SJ8 248 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 TLR10Q9BXR5 811 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 MCOLN1Q9GZU1 580 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 NAGPAQ9UK23 515 aa13.21□□□□□ -0.29
CIITA-202ENST00000381835 TMCO5BA8MYB1 307 aa13.21□□□□□ -0.3
CIITA-202ENST00000381835 MMEP08473 750 aa13.21□□□□□ -0.3
CIITA-202ENST00000381835 ZNF598Q86UK7 904 aaKnown RBP13.21□□□□□ -0.3
CIITA-202ENST00000381835 PALB2Q86YC2 1186 aa13.21□□□□□ -0.3
CIITA-202ENST00000381835 RNF10Q8N5U6 811 aaKnown RBP13.21□□□□□ -0.3
CIITA-202ENST00000381835 OLIG1Q8TAK6 271 aa13.21□□□□□ -0.3
CIITA-202ENST00000381835 SEPT8Q92599 483 aa13.21□□□□□ -0.3
CIITA-202ENST00000381835 MS4A14Q96JA4 679 aa13.21□□□□□ -0.3
CIITA-202ENST00000381835 ZIM3Q96PE6 472 aa13.21□□□□□ -0.3
CIITA-202ENST00000381835 SYT11Q9BT88 431 aa13.21□□□□□ -0.3
CIITA-202ENST00000381835 SDCBP2Q9H190 292 aa13.21□□□□□ -0.3
CIITA-202ENST00000381835 TSPYL2Q9H2G4 693 aaPredicted RBP13.21□□□□□ -0.3
CIITA-202ENST00000381835 NOCTQ9UK39 431 aaKnown RBP13.21□□□□□ -0.3
CIITA-202ENST00000381835 SNX9Q9Y5X1 595 aa13.21□□□□□ -0.3
CIITA-202ENST00000381835 A6NNZ2 444 aa13.2□□□□□ -0.3
CIITA-202ENST00000381835 PIRO00625 290 aa13.2□□□□□ -0.3
CIITA-202ENST00000381835 CLTBP09497 229 aa13.2□□□□□ -0.3
CIITA-202ENST00000381835 CYP3A5P20815 502 aa13.2□□□□□ -0.3
CIITA-202ENST00000381835 ANXA13P27216 316 aa13.2□□□□□ -0.3
CIITA-202ENST00000381835 LIG3P49916 1009 aa13.2□□□□□ -0.3
CIITA-202ENST00000381835 TUBB8Q3ZCM7 444 aa13.2□□□□□ -0.3
CIITA-202ENST00000381835 LRRC52Q8N7C0 313 aa13.2□□□□□ -0.3
CIITA-202ENST00000381835 UBR7Q8N806 425 aa13.2□□□□□ -0.3
CIITA-202ENST00000381835 BCO2Q9BYV7 579 aa13.2□□□□□ -0.3
CIITA-202ENST00000381835 SLC38A7Q9NVC3 462 aa13.2□□□□□ -0.3
CIITA-202ENST00000381835 TBX21Q9UL17 535 aa13.2□□□□□ -0.3
CIITA-202ENST00000381835 STAU1O95793 577 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms