RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 RNASEH2BQ5TBB1 312 aaKnown RBP19.45■□□□□ 0.7
CCDC3-201ENST00000378825 TMEM270Q6UE05 265 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.45■□□□□ 0.7
CCDC3-201ENST00000378825 ALLCQ8N6M5 410 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 FBXO27Q8NI29 283 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 SLITRK1Q96PX8 696 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 SH3GL3Q99963 347 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 PPP1R12CQ9BZL4 782 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 RANBP17Q9H2T7 1088 aaKnown RBP19.45■□□□□ 0.7
CCDC3-201ENST00000378825 TLE6Q9H808 572 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 PAPOLBQ9NRJ5 636 aaKnown RBP19.45■□□□□ 0.7
CCDC3-201ENST00000378825 C1orf112Q9NSG2 853 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 PCDHB2Q9Y5E7 798 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 TCRBV7S3A2A0A539 114 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 KRT1P04264 644 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 NOMO3P69849 1222 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 MRPS35P82673 323 aaKnown RBP19.45■□□□□ 0.7
CCDC3-201ENST00000378825 ALCAMQ13740 583 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 CCDC142Q17RM4 750 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 SLC30A9Q6PML9 568 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 EXD1Q8NHP7 514 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.45■□□□□ 0.7
CCDC3-201ENST00000378825 MFSD14AQ96MC6 490 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 PSMC3IPQ9P2W1 217 aaPredicted RBP19.45■□□□□ 0.7
CCDC3-201ENST00000378825 HERC5Q9UII4 1024 aaKnown RBP19.45■□□□□ 0.7
CCDC3-201ENST00000378825 RABGEF1Q9UJ41 708 aa19.45■□□□□ 0.7
CCDC3-201ENST00000378825 PCNTO95613 3336 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 E7ENQ6 273 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 SGK1O00141 431 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 GSC2O15499 205 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 FESP07332 822 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 OGDHQ02218 1023 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 TSNAXIP1Q2TAA8 658 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 TKFCQ3LXA3 575 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 MAP4K3Q8IVH8 894 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 SCYL3Q8IZE3 742 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 PTCD3Q96EY7 689 aaKnown RBP19.44■□□□□ 0.7
CCDC3-201ENST00000378825 DDX50Q9BQ39 737 aaKnown RBP19.44■□□□□ 0.7
CCDC3-201ENST00000378825 APOBEC3GQ9HC16 384 aaKnown RBP19.44■□□□□ 0.7
CCDC3-201ENST00000378825 AGO4Q9HCK5 861 aaKnown RBP19.44■□□□□ 0.7
CCDC3-201ENST00000378825 MRPL11Q9Y3B7 192 aaKnown RBP19.44■□□□□ 0.7
CCDC3-201ENST00000378825 HNRNPDLO14979 420 aaKnown RBP19.44■□□□□ 0.7
CCDC3-201ENST00000378825 ALOX15BO15296 676 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 CCNE2O96020 404 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 RASSF2P50749 326 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 PTP4A2Q12974 167 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 PPP1R15BQ5SWA1 713 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 OR52E8Q6IFG1 317 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 ZC3H18Q86VM9 953 aaKnown RBP19.44■□□□□ 0.7
CCDC3-201ENST00000378825 TMEM174Q8WUU8 243 aa19.44■□□□□ 0.7
CCDC3-201ENST00000378825 EIF2AK2P19525 551 aaKnown RBP19.43■□□□□ 0.7
CCDC3-201ENST00000378825 YY1P25490 414 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 ACOT2P49753 483 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 PAPOLAP51003 745 aaKnown RBP19.43■□□□□ 0.7
CCDC3-201ENST00000378825 GCNT1Q02742 428 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 MDH1BQ5I0G3 518 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 RSBN1LQ6PCB5 846 aaPredicted RBP19.43■□□□□ 0.7
CCDC3-201ENST00000378825 CPXCR1Q8N123 301 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 KCNK13Q9HB14 408 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 KMT5AQ9NQR1 393 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 ANKFY1Q9P2R3 1169 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 LNPEPQ9UIQ6 1025 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 CNTNAP1P78357 1384 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 E5RJQ4 531 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 HAUS5O94927 633 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 HLA-DRAP01903 254 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 NEFHP12036 1026 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 AMPD1P23109 780 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 CETN2P41208 172 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 FYB2Q5VWT5 728 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 TDRD10Q5VZ19 366 aaKnown RBP19.43■□□□□ 0.7
CCDC3-201ENST00000378825 ANO5Q75V66 913 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 LARGE2Q8N3Y3 721 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 ANKRD27Q96NW4 1050 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 PAFAH2Q99487 392 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 BTBD10Q9BSF8 475 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 TAS2R1Q9NYW7 299 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 ASB3Q9Y575 518 aa19.43■□□□□ 0.7
CCDC3-201ENST00000378825 GYG2O15488 501 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 EAPPQ56P03 285 aaPredicted RBP19.42■□□□□ 0.7
CCDC3-201ENST00000378825 AP1ARQ63HQ0 302 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 CCNJLQ8IV13 435 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.42■□□□□ 0.7
CCDC3-201ENST00000378825 A0A1B0GVG6 124 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 TNNI1P19237 187 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 ACO1P21399 889 aaKnown RBP19.42■□□□□ 0.7
CCDC3-201ENST00000378825 VHLP40337 213 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 GEMIN4P57678 1058 aaKnown RBP19.42■□□□□ 0.7
CCDC3-201ENST00000378825 EFHC2Q5JST6 749 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 ZBTB41Q5SVQ8 909 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 C3orf62Q6ZUJ4 267 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 RHPN2Q8IUC4 686 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 MZB1Q8WU39 189 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 FAM151AQ8WW52 585 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 FAM81BQ96LP2 452 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 FBXL18Q96ME1 805 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 TMEM120AQ9BXJ8 343 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 ST6GALNAC4Q9H4F1 302 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 MANSC1Q9H8J5 431 aa19.42■□□□□ 0.7
CCDC3-201ENST00000378825 PCDHB4Q9Y5E5 795 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms