RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 PARD6BQ9BYG5 372 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 ROGDIQ9GZN7 287 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 ZDHHC4Q9NPG8 344 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 RNF14Q9UBS8 474 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 NOVA2Q9UNW9 492 aaKnown RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 TNFSF13BQ9Y275 285 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 CDHR2Q9BYE9 1310 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 KRT87PA6NCN2 255 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 BUB1O43683 1085 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 CCT3P49368 545 aaKnown RBP9.01□□□□□ -0.97
SYNE1-206ENST00000367253 HSD17B4P51659 736 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 RASSF7Q02833 373 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 SCRN1Q12765 414 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 KLHL35Q6PF15 583 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 COL23A1Q86Y22 540 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-206ENST00000367253 GLYCTKQ8IVS8 523 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 TBC1D16Q8TBP0 767 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 PNPT1Q8TCS8 783 aaKnown RBP9.01□□□□□ -0.97
SYNE1-206ENST00000367253 KIF12Q96FN5 646 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 CATSPER2Q96P56 530 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 IDI2Q9BXS1 227 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 MUC3BQ9H195 1237 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 PYCARDQ9ULZ3 195 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 LRRC7Q96NW7 1537 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 ZC3H11AO75152 810 aaKnown RBP eCLIP9.01□□□□□ -0.97
SYNE1-206ENST00000367253 RFC5P40937 340 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 HALP42357 657 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 MARSP56192 900 aaKnown RBP9.01□□□□□ -0.97
SYNE1-206ENST00000367253 SOX10P56693 466 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 UBE3AQ05086 875 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 PLCL1Q15111 1095 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 CCDC85BQ15834 202 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-206ENST00000367253 HLA-DQA1Q5Y7H0 255 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 GPIHBP1Q8IV16 184 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 SAMD14Q8IZD0 417 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-206ENST00000367253 MCUQ8NE86 351 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 APBA2Q99767 749 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 TMEM60Q9H2L4 133 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 KLHL31Q9H511 634 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 NDE1Q9NXR1 346 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 PCDHA10Q9Y5I2 948 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 KNDC1Q76NI1 1749 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 ABCC4O15439 1325 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 ADAMTSL3P82987 1691 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 A8MXQ7 604 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 H3BRJ5 948 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 HAUS5O94927 633 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 LAG3P18627 525 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 CCDC153Q494R4 210 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 ZNF484Q5JVG2 852 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 CYP4F22Q6NT55 531 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 PPP1R18Q6NYC8 613 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 OTOP3Q7RTS5 596 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 DYMQ7RTS9 669 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 TRIM59Q8IWR1 403 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 CAPSLQ8WWF8 208 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 UPF1Q92900 1129 aaKnown RBP eCLIP9.01□□□□□ -0.97
SYNE1-206ENST00000367253 ULK4Q96C45 1275 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 PPP1R16AQ96I34 528 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 SAMD11Q96NU1 681 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 ELAC2Q9BQ52 826 aaKnown RBP9.01□□□□□ -0.97
SYNE1-206ENST00000367253 DSCC1Q9BVC3 393 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 DCTPP1Q9H773 170 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 CHST12Q9NRB3 414 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 PCDH8O95206 1070 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 MT-ND3P03897 115 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 CXCR2P25025 360 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 CHMLP26374 656 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 PSMC5P62195 406 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 FAM173BQ6P4H8 233 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 C16orf59Q7L2K0 433 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 SLC35F6Q8N357 371 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 HIPK4Q8NE63 616 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 MAGOHBQ96A72 148 aaKnown RBP9.01□□□□□ -0.97
SYNE1-206ENST00000367253 ZBTB18Q99592 522 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 MFN2O95140 757 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 SAT1P21673 171 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 GRIK4Q16099 956 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 TBRG1Q3YBR2 411 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 XKR3Q5GH77 459 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 SZRD1Q7Z422 152 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 NELFCDQ8IXH7 590 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 SYTL1Q8IYJ3 562 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 EID3Q8N140 333 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 ICA1LQ8NDH6 482 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 DCLK3Q9C098 648 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 PRMT7Q9NVM4 692 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-206ENST00000367253 DLGAP2Q9P1A6 1054 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 KIF17Q9P2E2 1029 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 TMEM5Q9Y2B1 443 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 KLHL20Q9Y2M5 609 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 AXIN2Q9Y2T1 843 aa9.01□□□□□ -0.97
SYNE1-206ENST00000367253 TNKSO95271 1327 aa9□□□□□ -0.97
SYNE1-206ENST00000367253 ATP5JP18859 108 aa9□□□□□ -0.97
SYNE1-206ENST00000367253 GRK3P35626 688 aa9□□□□□ -0.97
SYNE1-206ENST00000367253 DPP6P42658 865 aa9□□□□□ -0.97
SYNE1-206ENST00000367253 RAD23BP54727 409 aa9□□□□□ -0.97
SYNE1-206ENST00000367253 NFYCQ13952 458 aa9□□□□□ -0.97
SYNE1-206ENST00000367253 C1orf146Q5VVC0 180 aa9□□□□□ -0.97
SYNE1-206ENST00000367253 LRRC8BQ6P9F7 803 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms