RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TMA16Q96EY4 203 aaKnown RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 ACOX2Q99424 681 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 C2orf49Q9BVC5 232 aaPredicted RBP4.3□□□□□ -1.72
USH2A-202ENST00000366942 SFXN1Q9H9B4 322 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 SMARCAL1Q9NZC9 954 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 AHSPQ9NZD4 102 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 PKD2L2Q9NZM6 624 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 SLC45A1Q9Y2W3 748 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 PTCH2Q9Y6C5 1203 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 SPATA31D1Q6ZQQ2 1576 aa4.3□□□□□ -1.72
USH2A-202ENST00000366942 SALL1Q9NSC2 1324 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 CAMSAP1Q5T5Y3 1602 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 NEURL1BA8MQ27 555 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 CAPN5O15484 640 aaPredicted RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 TBC1D4O60343 1298 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 AOC2O75106 756 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 FSBPO95073 299 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 CLTAP09496 248 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 IL1R1P14778 569 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 TCF3P15923 654 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 SAT1P21673 171 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 WEE1P30291 646 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 TLX1P31314 330 aaPredicted RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 PTDSS1P48651 473 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 NOVA1P51513 510 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 EIF4A1P60842 406 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 TWF1Q12792 350 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 MED21Q13503 144 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 PTPN14Q15678 1187 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 HLFQ16534 295 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 EDRF1Q3B7T1 1238 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ZSCAN23Q3MJ62 389 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 KBTBD12Q3ZCT8 623 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 SLFNL1Q499Z3 407 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 TCEAL5Q5H9L2 206 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 GPR142Q7Z601 462 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 PPM1KQ8N3J5 372 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 PPM1NQ8N819 430 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 CDC26Q8NHZ8 85 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 TTC8Q8TAM2 541 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 SCYL1Q96KG9 808 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 FGD4Q96M96 766 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 AK8Q96MA6 479 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 TSPAN18Q96SJ8 248 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 NIFKQ9BYG3 293 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 SEL1LQ9UBV2 794 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 CRLS1Q9UJA2 301 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 SYNMO15061 1565 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ABCC4O15439 1325 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ABCC12Q96J65 1359 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 DYTNA2CJ06 578 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 FAM234BA2RU67 622 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 H3BMM5 538 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ARVCFO00192 962 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 MTSS1O43312 755 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 TIMM44O43615 452 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 PHF2O75151 1096 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 CCNDBP1O95273 360 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 PLGP00747 810 aaPredicted RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 FAM200BP0CF97 657 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 PUM1Q14671 1186 aaKnown RBP eCLIP4.29□□□□□ -1.72
USH2A-202ENST00000366942 LONRF2Q1L5Z9 754 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 KRT24Q2M2I5 525 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 CXCL17Q6UXB2 119 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 MRPS27Q92552 414 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 RUBCNQ92622 972 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 VPS33AQ96AX1 596 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 MRPL48Q96GC5 212 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 SLC38A3Q99624 504 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 SH3GL3Q99963 347 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 AMBRA1Q9C0C7 1298 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 CAAP1Q9H8G2 361 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 THSD1Q9NS62 852 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 RPS6KB2Q9UBS0 482 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 B4GALT7Q9UBV7 327 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 RAPGEFL1Q9UHV5 662 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 VAV3Q9UKW4 847 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 DIS3Q9Y2L1 958 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 FPGTO14772 594 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 RPN1P04843 607 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 COL6A1P12109 1028 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 IMPG1Q17R60 797 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 GLE1Q53GS7 698 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 PHF19Q5T6S3 580 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 KRT39Q6A163 491 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ALKBH2Q6NS38 261 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 GKN2Q86XP6 184 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 MRPL50Q8N5N7 158 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 ADAM2Q99965 735 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.29□□□□□ -1.72
USH2A-202ENST00000366942 CARD9Q9H257 536 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 TDP1Q9NUW8 608 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 ASNSD1Q9NWL6 643 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 SYBUQ9NX95 663 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 CTNNAL1Q9UBT7 734 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 GPR160Q9UJ42 338 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 EIF3LQ9Y262 564 aaKnown RBP4.29□□□□□ -1.72
USH2A-202ENST00000366942 PCDHA11Q9Y5I1 949 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 SCINQ9Y6U3 715 aa4.29□□□□□ -1.72
USH2A-202ENST00000366942 STK36Q9NRP7 1315 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms