RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 ZNF830Q96NB3 372 aaPredicted RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 TGS1Q96RS0 853 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 KCNK16Q96T55 309 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 TMEM175Q9BSA9 504 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 ZBP1Q9H171 429 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 MTIF3Q9H2K0 278 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 DDX43Q9NXZ2 648 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 TJP2Q9UDY2 1190 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 CYTH4Q9UIA0 394 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 FBXL5Q9UKA1 691 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 SLC27A5Q9Y2P5 690 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 WDR27A2RRH5 827 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 LRRC53A6NM62 1247 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 F8VZ95 297 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 P4HA2O15460 535 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 SEC24AO95486 1093 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 STAU1O95793 577 aaKnown RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 TPM2P07951 284 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 CCDC130P13994 396 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 CHRNB2P17787 502 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 OR1D2P34982 312 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 GNL1P36915 607 aaPredicted RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 VASPP50552 380 aaPredicted RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 ARPP19P56211 112 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 DLX2Q07687 328 aaPredicted RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 PTPN14Q15678 1187 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 SDHAF4Q5VUM1 108 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 PLPP4Q5VZY2 271 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 SPECC1LQ69YQ0 1117 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 LLGL2Q6P1M3 1020 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 DDX53Q86TM3 631 aaKnown RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 ADGRF2Q8IZF7 708 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 OR6B3Q8NGW1 331 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 DDX1Q92499 740 aaKnown RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 TMEM169Q96HH4 297 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 PCDHB18PQ96TA0 734 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 TCF25Q9BQ70 676 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 TTPALQ9BTX7 342 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 NIF3L1Q9GZT8 377 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 FAM49BQ9NUQ9 324 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 CHORDC1Q9UHD1 332 aaPredicted RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 TFR2Q9UP52 801 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 CDY1Q9Y6F8 540 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 TSC2P49815 1807 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 A0A1W2PQC6 194 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 C2orf71A6NGG8 1288 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 LINC01565O15544 149 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 GFPT2O94808 682 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 CXCL14O95715 111 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 ABL1P00519 1130 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 SOD2P04179 222 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 CYP11A1P05108 521 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 LAG3P18627 525 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 ATICP31939 592 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 ZNF132P52740 706 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 AP3M2P53677 418 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 SMAD3P84022 425 aaKnown RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 DSG1Q02413 1049 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 GCNT1Q02742 428 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 INCA1Q0VD86 236 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 GPM6BQ13491 265 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 MTF1Q14872 753 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 UVSSAQ2YD98 709 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 HABP4Q5JVS0 413 aaKnown RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 PPP1R26Q5T8A7 1209 aaPredicted RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 DPH6Q7L8W6 267 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 TMC7Q7Z402 723 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 NOP9Q86U38 636 aaKnown RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 FAM71AQ8IYT1 594 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 FUKQ8N0W3 1084 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 MRPL43Q8N983 215 aaKnown RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 APPL2Q8NEU8 664 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 ANKRD20A12PQ8NF67 263 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 ANP32BQ92688 251 aaKnown RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 PCED1BQ96HM7 432 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 MRFAP1L1Q96HT8 127 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 NT5C1BQ96P26 610 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 COLEC11Q9BWP8 271 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 CNTN6Q9UQ52 1028 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 PCDHB12Q9Y5F1 795 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 SF3B1O75533 1304 aaKnown RBP eCLIP4.3□□□□□ -1.72
LIG4-201ENST00000356922 A8MXQ7 604 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 PIK3R2O00459 728 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 HUS1O60921 280 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 TRIM21P19474 475 aaKnown RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 CYP2F1P24903 491 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 BRD2P25440 801 aaKnown RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 USP8P40818 1118 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 YWHAHQ04917 246 aaPredicted RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 MYO1EQ12965 1108 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 OVOS1Q6IE37 1185 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 TMEM139Q8IV31 216 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 FBXO22Q8NEZ5 403 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 ZMIZ2Q8NF64 920 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 NDRG1Q92597 394 aaKnown RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 KHSRPQ92945 711 aaKnown RBP eCLIP4.3□□□□□ -1.72
LIG4-201ENST00000356922 PCMTD1Q96MG8 357 aaPredicted RBP4.3□□□□□ -1.72
LIG4-201ENST00000356922 UROC1Q96N76 676 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 SYT11Q9BT88 431 aa4.3□□□□□ -1.72
LIG4-201ENST00000356922 B3GNT5Q9BYG0 378 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms