RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 DDX43Q9NXZ2 648 aaKnown RBP19.76■□□□□ 0.75
CLN3-202ENST00000355477 HCRTO43612 131 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 EXOC3O60645 756 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 ATF6P18850 670 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 TNNI1P19237 187 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 FCARP24071 287 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 ACAT1P24752 427 aaKnown RBP19.75■□□□□ 0.75
CLN3-202ENST00000355477 TUFMP49411 452 aaKnown RBP19.75■□□□□ 0.75
CLN3-202ENST00000355477 NHLH1Q02575 133 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 DPYDQ12882 1025 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 LIMS2Q7Z4I7 341 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 TMEM86AQ8N2M4 240 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 LEMD2Q8NC56 503 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 PSMG2Q969U7 264 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 FNBP1Q96RU3 617 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 CGRRF1Q99675 332 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 SEPT5Q99719 369 aaPredicted RBP19.75■□□□□ 0.75
CLN3-202ENST00000355477 LPIN3Q9BQK8 851 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 ZNF334Q9HCZ1 680 aaPredicted RBP19.75■□□□□ 0.75
CLN3-202ENST00000355477 DMAC2Q9NW81 257 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 ZNF638Q14966 1978 aaKnown RBP19.75■□□□□ 0.75
CLN3-202ENST00000355477 OBSL1O75147 1896 aa19.75■□□□□ 0.75
CLN3-202ENST00000355477 GABRDO14764 452 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 ECI2O75521 394 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 HAPLN1P10915 354 aaPredicted RBP19.74■□□□□ 0.75
CLN3-202ENST00000355477 CASP4P49662 377 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 NUCB2P80303 420 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 MYO1EQ12965 1108 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 TEAD2Q15562 447 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 MGAT5BQ3V5L5 792 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 DCP1BQ8IZD4 617 aaKnown RBP19.74■□□□□ 0.75
CLN3-202ENST00000355477 ADGRF2Q8IZF7 708 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 TOP6BLQ8N6T0 577 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 GOLGA5Q8TBA6 731 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 C2orf15Q8WU43 125 aaKnown RBP19.74■□□□□ 0.75
CLN3-202ENST00000355477 ASB16Q96NS5 453 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 PKMYT1Q99640 499 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 ACBD6Q9BR61 282 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 ABI2Q9NYB9 513 aaPredicted RBP19.74■□□□□ 0.75
CLN3-202ENST00000355477 R3HCC1Q9Y3T6 440 aaKnown RBP19.74■□□□□ 0.75
CLN3-202ENST00000355477 ASB3Q9Y575 518 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 PTPRDP23468 1912 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 GREB1Q4ZG55 1949 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 MIA3Q5JRA6 1907 aa19.74■□□□□ 0.75
CLN3-202ENST00000355477 NUP210Q8TEM1 1887 aaPredicted RBP19.73■□□□□ 0.75
CLN3-202ENST00000355477 A0A1W2PRU2 124 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 RHOBTB3O94955 611 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 AOC1P19801 751 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 MYL7Q01449 175 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 TSPY1Q01534 308 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 SMARCB1Q12824 385 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 CCDC142Q17RM4 750 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 GAREM2Q75VX8 874 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 SLC9A9Q8IVB4 645 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 SPPL2BQ8TCT7 592 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 GIPC2Q8TF65 315 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 TMEM174Q8WUU8 243 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 KBTBD7Q8WVZ9 684 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 ELSPBP1Q96BH3 223 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 PI4K2AQ9BTU6 479 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 TBC1D17Q9HA65 648 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 ARHGEF3Q9NR81 526 aa19.73■□□□□ 0.75
CLN3-202ENST00000355477 TICRRQ7Z2Z1 1910 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 F5P12259 2224 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 WDR87Q6ZQQ6 2873 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 STK25O00506 426 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 PDXKO00764 312 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 PRPF40AO75400 957 aaKnown RBP19.72■□□□□ 0.75
CLN3-202ENST00000355477 LMO2P25791 158 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 SNW1Q13573 536 aaKnown RBP19.72■□□□□ 0.75
CLN3-202ENST00000355477 INTS6LQ5JSJ4 861 aaKnown RBP19.72■□□□□ 0.75
CLN3-202ENST00000355477 STXBP5Q5T5C0 1151 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 DPH6Q7L8W6 267 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 ZSCAN18Q8TBC5 510 aaPredicted RBP19.72■□□□□ 0.75
CLN3-202ENST00000355477 SPATA18Q8TC71 538 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 FAM200AQ8TCP9 573 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 SMARCD2Q92925 531 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 PRRX2Q99811 253 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 ZFP14Q9HCL3 533 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 GTF3C4Q9UKN8 822 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 PCDHB5Q9Y5E4 795 aa19.72■□□□□ 0.75
CLN3-202ENST00000355477 GALR2O43603 387 aaPredicted RBP19.71■□□□□ 0.75
CLN3-202ENST00000355477 ATP2C2O75185 946 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 NR3C1P04150 777 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 VIPR2P41587 438 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 LHX1P48742 406 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 GPR15P49685 360 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 PTPN5P54829 565 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 ITIH5Q86UX2 942 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 GPIHBP1Q8IV16 184 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 FMR1NBQ8N0W7 255 aaPredicted RBP19.71■□□□□ 0.75
CLN3-202ENST00000355477 PARD3BQ8TEW8 1205 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 MKNK1Q9BUB5 465 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 TRPV4Q9HBA0 871 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 MAPK8IP1Q9UQF2 711 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 MYO15AQ9UKN7 3530 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 NCANO14594 1321 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 CACNA1IQ9P0X4 2223 aa19.71■□□□□ 0.75
CLN3-202ENST00000355477 ANAPC1Q9H1A4 1944 aa19.7■□□□□ 0.74
CLN3-202ENST00000355477 DMDP11532 3685 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms