RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 B4GALT4O60513 344 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 KRT19P08727 400 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 CLCN3P51790 818 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 TAP1Q03518 808 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 LRRC14Q15048 493 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 SPRED3Q2MJR0 410 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 Q3C1V9 767 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 CCDC197Q8NCU1 140 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 ASAP2O43150 1006 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 VIMP08670 466 aaKnown RBP23■■□□□ 1.27
SHMT1-202ENST00000352886 ZSCAN5DPP0CG00 497 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 RAP1GAPP47736 663 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 IREB2P48200 963 aaKnown RBP23■■□□□ 1.27
SHMT1-202ENST00000352886 TFDP1Q14186 410 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 TMEM63BQ5T3F8 832 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 RELL1Q8IUW5 271 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 TMEM192Q8IY95 271 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 CNPY4Q8N129 248 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 MGARPQ8TDB4 240 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 RBM15Q96T37 977 aaKnown RBP eCLIP23■■□□□ 1.27
SHMT1-202ENST00000352886 LRRD1A4D1F6 860 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 TCEA3O75764 348 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 CXCL8P10145 99 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 CD19P15391 556 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 SF3A3Q12874 501 aaKnown RBP eCLIP23■■□□□ 1.272e-6■■■■■ 29.6
SHMT1-202ENST00000352886 EAPPQ56P03 285 aaPredicted RBP23■■□□□ 1.27
SHMT1-202ENST00000352886 TFDP3Q5H9I0 405 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 EFCAB12Q6NXP0 572 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 DENND1BQ6P3S1 775 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 DRICH1Q6PGQ1 229 aaPredicted RBP23■■□□□ 1.27
SHMT1-202ENST00000352886 VSTM1Q6UX27 236 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 ZCCHC9Q8N567 271 aaKnown RBP23■■□□□ 1.27
SHMT1-202ENST00000352886 CCHCR1Q8TD31 782 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 DYDC1Q8WWB3 177 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 HAUS1Q96CS2 278 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 MINDY3Q9H8M7 445 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 TBK1Q9UHD2 729 aa23■■□□□ 1.27
SHMT1-202ENST00000352886 hCG_1818297A0A087WSY0 165 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 COPS2P61201 443 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 KCTD2Q14681 263 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 PTPN20Q4JDL3 420 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 ANKRD20A8PQ5CZ79 823 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 NIPA2Q8N8Q9 360 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 RBPJLQ9UBG7 517 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 GOLGA8SH3BPF8 625 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 CETPP11597 493 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 ETS1P14921 441 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 ARSEP51690 589 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 WDR78Q5VTH9 848 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 CCDC62Q6P9F0 684 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 PIGWQ7Z7B1 504 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 ERO1BQ86YB8 467 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 ALLCQ8N6M5 410 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 MMP19Q99542 508 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 CDT1Q9H211 546 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 ACTR5Q9H9F9 607 aaPredicted RBP22.99■■□□□ 1.27
SHMT1-202ENST00000352886 DDX56Q9NY93 547 aaKnown RBP22.99■■□□□ 1.27
SHMT1-202ENST00000352886 SAMD15Q9P1V8 674 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 TJP2Q9UDY2 1190 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 STRIP2Q9ULQ0 834 aa22.99■■□□□ 1.27
SHMT1-202ENST00000352886 DNM1LO00429 736 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 DNALI1O14645 258 aaPredicted RBP22.98■■□□□ 1.27
SHMT1-202ENST00000352886 RFC1P35251 1148 aaPredicted RBP22.98■■□□□ 1.27
SHMT1-202ENST00000352886 CDKN2BP42772 138 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 MAGEA4P43358 317 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 YWHAEP62258 255 aaKnown RBP22.98■■□□□ 1.27
SHMT1-202ENST00000352886 MBTD1Q05BQ5 628 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 CYP4F22Q6NT55 531 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 MOB2Q70IA6 237 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 CYP4X1Q8N118 509 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 ANKS4BQ8N8V4 417 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 CCT6BQ92526 530 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 SMARCAD1Q9H4L7 1026 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 RPF1Q9H9Y2 349 aaKnown RBP22.98■■□□□ 1.27
SHMT1-202ENST00000352886 KCNK9Q9NPC2 374 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 ADARB2Q9NS39 739 aaKnown RBP22.98■■□□□ 1.27
SHMT1-202ENST00000352886 AGTPBP1Q9UPW5 1226 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 DNAJC25-GNG10A0A024R161 153 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 IQCF3P0C7M6 154 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 TXNP10599 105 aaKnown RBP22.98■■□□□ 1.27
SHMT1-202ENST00000352886 TMEM130Q8N3G9 435 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 ELAC2Q9BQ52 826 aaKnown RBP22.98■■□□□ 1.27
SHMT1-202ENST00000352886 EFCC1Q9HA90 598 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 CYTH4Q9UIA0 394 aa22.98■■□□□ 1.27
SHMT1-202ENST00000352886 CDH16O75309 829 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 PSMA2P25787 234 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 PTPN7P35236 360 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 SLC26A2P50443 739 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 CDH8P55286 799 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 GPS1Q13098 491 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 WDR72Q3MJ13 1102 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 ANKRD42Q8N9B4 389 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 CCDC77Q9BR77 488 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 FOXP3Q9BZS1 431 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 SIX4Q9UIU6 781 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 SBF1O95248 1867 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 CXCL11O14625 94 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 HBP1O60381 514 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 BRAFP15056 766 aa22.97■■□□□ 1.27
SHMT1-202ENST00000352886 POLR2BP30876 1174 aaKnown RBP22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms