RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 GPC3P51654 580 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 RIN2Q8WYP3 895 aaPredicted RBP13.35□□□□□ -0.27
USP47-202ENST00000339865 PRG4Q92954 1404 aaPredicted RBP13.35□□□□□ -0.27
USP47-202ENST00000339865 ATAD2BQ9ULI0 1458 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 YWHAQP27348 245 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 PRCPP42785 496 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 HNMTP50135 292 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 VAMP7P51809 220 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 DDX39BQ13838 428 aaKnown RBP13.35□□□□□ -0.27
USP47-202ENST00000339865 PMF1Q6P1K2 205 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 ZBTB38Q8NAP3 1195 aaPredicted RBP13.35□□□□□ -0.27
USP47-202ENST00000339865 SSNA1O43805 119 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 MAPK6Q16659 721 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 GSTA3Q16772 222 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 CDC73Q6P1J9 531 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 ATL2Q8NHH9 583 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 COQ6Q9Y2Z9 468 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 LGALS16A8MUM7 142 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 MZF1P28698 734 aaPredicted RBP13.35□□□□□ -0.27
USP47-202ENST00000339865 RGS4P49798 205 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 PPIDQ08752 370 aaKnown RBP13.35□□□□□ -0.27
USP47-202ENST00000339865 TRAP1Q12931 704 aaKnown RBP13.35□□□□□ -0.27
USP47-202ENST00000339865 ITGADQ13349 1161 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 ARMC6Q6NXE6 501 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 PROSER1Q86XN7 944 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 APOL4Q9BPW4 351 aa13.35□□□□□ -0.27
USP47-202ENST00000339865 ABCC1P33527 1531 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 CCDC162PA2VCL2 907 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 NT5DC4Q86YG4 428 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 SCUBE1Q8IWY4 988 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 PCDHB8Q9UN66 801 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 ADORA2BP29275 332 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 GUCY1A2P33402 732 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 RGS2P41220 211 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 PGS1Q32NB8 556 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 UTYO14607 1347 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 SYCP2Q9BX26 1530 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 TSNQ15631 228 aaKnown RBP13.34□□□□□ -0.27
USP47-202ENST00000339865 PHACTR1Q9C0D0 580 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 NR3C1P04150 777 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 ALOX15P16050 662 aaPredicted RBP13.34□□□□□ -0.27
USP47-202ENST00000339865 CYP2C19P33261 490 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 GPC1P35052 558 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 ESRP1Q6NXG1 681 aaKnown RBP13.34□□□□□ -0.27
USP47-202ENST00000339865 RASSF6Q6ZTQ3 369 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 PNKPQ96T60 521 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 SIK3Q9Y2K2 1263 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 FHOD1Q9Y613 1164 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 DIDO1Q9BTC0 2240 aaKnown RBP13.34□□□□□ -0.27
USP47-202ENST00000339865 FLT4P35916 1363 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 ALDH1A2O94788 518 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 MYL12AP19105 171 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 EDRF1Q3B7T1 1238 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 FBXO42Q6P3S6 717 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 DDX50Q9BQ39 737 aaKnown RBP13.34□□□□□ -0.27
USP47-202ENST00000339865 ECDO95905 644 aaPredicted RBP13.34□□□□□ -0.27
USP47-202ENST00000339865 POTEIP0CG38 1075 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 CASP1P29466 404 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 TRAF3Q13114 568 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 KCNT1Q5JUK3 1230 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 PROM2Q8N271 834 aa13.34□□□□□ -0.27
USP47-202ENST00000339865 MAPK10P53779 464 aa13.33□□□□□ -0.27
USP47-202ENST00000339865 CLEC16AQ2KHT3 1053 aa13.33□□□□□ -0.27
USP47-202ENST00000339865 CCDC80Q76M96 950 aa13.33□□□□□ -0.27
USP47-202ENST00000339865 SAPCD2Q86UD0 394 aa13.33□□□□□ -0.27
USP47-202ENST00000339865 BEST2Q8NFU1 509 aa13.33□□□□□ -0.27
USP47-202ENST00000339865 SGSM3Q96HU1 749 aa13.33□□□□□ -0.27
USP47-202ENST00000339865 RIC8BQ9NVN3 520 aa13.33□□□□□ -0.27
USP47-202ENST00000339865 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.33□□□□□ -0.27
USP47-202ENST00000339865 ECE2O60344 883 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 PGM3O95394 542 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 PTPN1P18031 435 aaKnown RBP13.33□□□□□ -0.28
USP47-202ENST00000339865 DSG3P32926 999 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 MROH9Q5TGP6 573 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 PNMA5Q96PV4 448 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 FKBP14Q9NWM8 211 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 TUBGCP4Q9UGJ1 667 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 SCNN1BP51168 640 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 CEBPGP53567 150 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 XPO6Q96QU8 1125 aaKnown RBP13.33□□□□□ -0.28
USP47-202ENST00000339865 LOC100506127A0A0U1RQW1 187 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 FAM20BO75063 409 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 TIPRLO75663 272 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 ATG7O95352 703 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 FNTAP49354 379 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 CITED4Q96RK1 184 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 SF3B1O75533 1304 aaKnown RBP eCLIP13.33□□□□□ -0.289e-7■■■■■ 47.8
USP47-202ENST00000339865 CCDC130P13994 396 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 LBPP18428 481 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 SUZ12Q15022 739 aaKnown RBP13.33□□□□□ -0.28
USP47-202ENST00000339865 R3HDM1Q15032 1099 aaKnown RBP13.33□□□□□ -0.28
USP47-202ENST00000339865 UGP2Q16851 508 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 OTUD3Q5T2D3 398 aaPredicted RBP13.33□□□□□ -0.28
USP47-202ENST00000339865 ZNF544Q6NX49 715 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 C9orf72Q96LT7 481 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 ANO9A1A5B4 782 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 STX5Q13190 355 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 ERMARDQ5T6L9 678 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 KBTBD2Q8IY47 623 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 XXYLT1Q8NBI6 393 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms