RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 CEP57Q86XR8 500 aa7.22□□□□□ -1.25
SF3B1-201ENST00000335508 KIAA0319LQ8IZA0 1049 aa7.22□□□□□ -1.25
SF3B1-201ENST00000335508 IRX2Q9BZI1 471 aaPredicted RBP7.22□□□□□ -1.25
SF3B1-201ENST00000335508 CYB561D2O14569 222 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 VTNP04004 478 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 CXCR5P32302 372 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 CENPCQ03188 943 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 PABPC1LQ4VXU2 614 aaKnown RBP7.21□□□□□ -1.25
SF3B1-201ENST00000335508 C6orf118Q5T5N4 469 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 ZNF662Q6ZS27 426 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 SLC24A5Q71RS6 500 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 TMC7Q7Z402 723 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 SLC13A5Q86YT5 568 aaPredicted RBP7.21□□□□□ -1.25
SF3B1-201ENST00000335508 FAM71AQ8IYT1 594 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 EXD1Q8NHP7 514 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 SCG3Q8WXD2 468 aaKnown RBP7.21□□□□□ -1.25
SF3B1-201ENST00000335508 PAIP2Q9BPZ3 127 aaKnown RBP7.21□□□□□ -1.25
SF3B1-201ENST00000335508 ZSWIM1Q9BR11 485 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.21□□□□□ -1.25
SF3B1-201ENST00000335508 PAK5Q9P286 719 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 TLK1Q9UKI8 766 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 ATP8A1Q9Y2Q0 1164 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 F2P00734 622 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 PDGFRBP09619 1106 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 GPD1P21695 349 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 GUCY2FP51841 1108 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 MRPS6P82932 125 aaKnown RBP7.21□□□□□ -1.25
SF3B1-201ENST00000335508 CCDC137Q6PK04 289 aaKnown RBP7.21□□□□□ -1.25
SF3B1-201ENST00000335508 MMGT1Q8N4V1 131 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 SLC35G2Q8TBE7 412 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 MFSD14AQ96MC6 490 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 SPON2Q9BUD6 331 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 MRFAP1Q9Y605 127 aa7.21□□□□□ -1.25
SF3B1-201ENST00000335508 EXOC1LA0A1B0GW35 172 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 COMTP21964 271 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 CCDC15Q0P6D6 951 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 DRP2Q13474 957 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 BTG3Q14201 252 aaPredicted RBP7.21□□□□□ -1.26
SF3B1-201ENST00000335508 PTPROQ16827 1216 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 PAPD7Q5XG87 772 aaKnown RBP7.21□□□□□ -1.26
SF3B1-201ENST00000335508 IFNL1Q8IU54 200 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 ARHGAP24Q8N264 748 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 SPPL2BQ8TCT7 592 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 STK32AQ8WU08 396 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 HHIPL1Q96JK4 782 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 UROC1Q96N76 676 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 NUDCD1Q96RS6 583 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 DMAP1Q9NPF5 467 aaPredicted RBP7.21□□□□□ -1.26
SF3B1-201ENST00000335508 CNTNAP1P78357 1384 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 PRRG1O14668 218 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 PSTPIP1O43586 416 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 ZNF286BP0CG31 522 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 SMIM10L2AP0DMW4 78 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 SMIM10L2BP0DMW5 78 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 ARL2P36404 184 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 ALDH1A3P47895 512 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 ITGA7Q13683 1181 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 KLHL38Q2WGJ6 581 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 C3orf20Q8ND61 904 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 COG1Q8WTW3 980 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 USP13Q92995 863 aaPredicted RBP7.21□□□□□ -1.26
SF3B1-201ENST00000335508 FBXL18Q96ME1 805 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 BRD8Q9H0E9 1235 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 DDIT4Q9NX09 232 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.21□□□□□ -1.263e-10■□□□□ 10.5
SF3B1-201ENST00000335508 PCDHGC5Q9Y5F6 944 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 HMGB1P1B2RPK0 211 aaPredicted RBP7.21□□□□□ -1.26
SF3B1-201ENST00000335508 PSMD3O43242 534 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 CAPN15O75808 1086 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 VIMP08670 466 aaKnown RBP7.21□□□□□ -1.26
SF3B1-201ENST00000335508 MSH2P43246 934 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 PSEN1P49768 467 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 PMS1P54277 932 aaKnown RBP7.21□□□□□ -1.26
SF3B1-201ENST00000335508 TPI1P60174 286 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 YWHAHQ04917 246 aaPredicted RBP7.21□□□□□ -1.26
SF3B1-201ENST00000335508 KIAA1755Q5JYT7 1200 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 MAMDC4Q6UXC1 1216 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 CCDC121Q6ZUS5 278 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 EIF1ADQ8N9N8 165 aaKnown RBP7.21□□□□□ -1.26
SF3B1-201ENST00000335508 CDK5RAP1Q96SZ6 601 aaKnown RBP7.21□□□□□ -1.26
SF3B1-201ENST00000335508 VIPAS39Q9H9C1 493 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.21□□□□□ -1.262e-7■■■□□ 15.8
SF3B1-201ENST00000335508 PGAP2Q9UHJ9 254 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 POLIQ9UNA4 740 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 FZD1Q9UP38 647 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 HEY1Q9Y5J3 304 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 NWD2Q9ULI1 1742 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 ASTN1O14525 1302 aa7.21□□□□□ -1.26
SF3B1-201ENST00000335508 C3orf70A6NLC5 250 aaPredicted RBP7.2□□□□□ -1.26
SF3B1-201ENST00000335508 CST8O60676 142 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 RASSF2P50749 326 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 PAPOLAP51003 745 aaKnown RBP7.2□□□□□ -1.26
SF3B1-201ENST00000335508 MAPK7Q13164 816 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 CASP8Q14790 479 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 CTXN3Q4LDR2 81 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 GLRA4Q5JXX5 417 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 VSIG1Q86XK7 387 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 PPP4R1Q8TF05 950 aa7.2□□□□□ -1.26
SF3B1-201ENST00000335508 ACO2Q99798 780 aaKnown RBP7.2□□□□□ -1.26
SF3B1-201ENST00000335508 SIK2Q9H0K1 926 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms