RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TRIM43Q96BQ3 446 aaPredicted RBP15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 CYFIP2Q96F07 1278 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 SENP8Q96LD8 212 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 CASD1Q96PB1 797 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 ALS2CR12Q96Q35 445 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 THAP2Q9H0W7 228 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 UVRAGQ9P2Y5 699 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 DNAI1Q9UI46 699 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 DSEQ9UL01 958 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 INPP5FQ9Y2H2 1132 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 CEP83Q9Y592 693 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 CAPN6Q9Y6Q1 641 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 MACROD2A1Z1Q3 448 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 CYB561D2O14569 222 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 CALCAP01258 141 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 CFHP08603 1231 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 SETSIPP0DME0 302 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 CD19P15391 556 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 TYMPP19971 482 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 LHX1P48742 406 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 PKDCCQ504Y2 493 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 ZNF394Q53GI3 561 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 NAA35Q5VZE5 725 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 SLFN11Q7Z7L1 901 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 LRRC57Q8N9N7 239 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 ARHGEF26Q96DR7 871 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 TNIP3Q96KP6 325 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 SUSD3Q96L08 255 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 PAAF1Q9BRP4 392 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 TMEM175Q9BSA9 504 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 PDCL3Q9H2J4 239 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 L2HGDHQ9H9P8 463 aa15.85■□□□□ 0.13
CCDC88C-202ENST00000334448 LTBP2Q14767 1821 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 A8MXQ7 604 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 TMCO5BA8MYB1 307 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 B4GALT3O60512 393 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 B3GAT3O94766 335 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 BAIAP3O94812 1187 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 DDHD2O94830 711 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 ODC1P11926 461 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 CASQ1P31415 396 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 GNL1P36915 607 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 TUBB2AQ13885 445 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 TIGD5Q53EQ6 642 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 DNTTIP2Q5QJE6 756 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 OSTM1Q86WC4 334 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 ZNF280BQ86YH2 543 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 ABI1Q8IZP0 508 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 TMEM199Q8N511 208 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 WDTC1Q8N5D0 677 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 TET1Q8NFU7 2136 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 OR6B3Q8NGW1 331 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 TPCN2Q8NHX9 752 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 NAPGQ99747 312 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 TUBB2BQ9BVA1 445 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 SNX25Q9H3E2 840 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 PUF60Q9UHX1 559 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 LRFN2Q9ULH4 789 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 JRKLQ9Y4A0 524 aa15.84■□□□□ 0.13
CCDC88C-202ENST00000334448 GRID2IPA4D2P6 1211 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 CTAGE9A4FU28 777 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 MICAL2O94851 1124 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 KIF4AO95239 1232 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 MOCS3O95396 460 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 CALB1P05937 261 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 RAG1P15918 1043 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 ABCB4P21439 1286 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 ITGB8P26012 769 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 GPD2P43304 727 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 PAPD7Q5XG87 772 aaKnown RBP15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 WSCD1Q658N2 575 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 DENND1BQ6P3S1 775 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 DEFB128Q7Z7B8 93 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 LRRC43Q8N309 656 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 SLC35G2Q8TBE7 412 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 STK32AQ8WU08 396 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 HEXIM2Q96MH2 286 aaKnown RBP15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 PCDHB8Q9UN66 801 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 COL4A6Q14031 1691 aa15.83■□□□□ 0.12
CCDC88C-202ENST00000334448 SCN5AQ14524 2016 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 TCRBV5S1A1TA0A578 114 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 EN2P19622 333 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 IGFBP6P24592 240 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 PCSK1P29120 753 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 GABRB2P47870 512 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 RPL34P49207 117 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 AMPD2Q01433 879 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 LIN9Q5TKA1 542 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 PLEKHA7Q6IQ23 1121 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 C11orf63Q6NUN7 778 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 DSTYKQ6XUX3 929 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 ACOT1Q86TX2 421 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 DNAAF5Q86Y56 855 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 PASD1Q8IV76 773 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 SYCE1Q8N0S2 351 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 B3GALNT2Q8NCR0 500 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 C1orf131Q8NDD1 294 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 CPA5Q8WXQ8 436 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 ZNF653Q96CK0 615 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 NRDE2Q9H7Z3 1164 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms