RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 RFX6Q8HWS3 928 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 ABRAQ8N0Z2 381 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 GLIS1Q8NBF1 620 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 TMEM35BQ8NCS4 154 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 NLRP4Q96MN2 994 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 PSMC3IPQ9P2W1 217 aaPredicted RBP11.08□□□□□ -0.64
COL3A1-202ENST00000317840 EXTL3O43909 919 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 RPS12P25398 132 aaKnown RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 BRD2P25440 801 aaKnown RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 ARL4CP56559 192 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 TAF1BQ53T94 588 aaPredicted RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 NLRP9Q7RTR0 991 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 DPP9Q86TI2 863 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 MTDHQ86UE4 582 aaKnown RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 CDR2LQ86X02 465 aaPredicted RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 ZCCHC9Q8N567 271 aaKnown RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 KIAA1683Q9H0B3 1180 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 A0A1W2PPM1 405 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 WEE2P0C1S8 567 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 HADHQ16836 314 aaKnown RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 TRABD2AQ86V40 505 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 CCDC125Q86Z20 511 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 AGGF1Q8N302 714 aaeCLIP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 RIBC1Q8N443 379 aaPredicted RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 DDX1Q92499 740 aaKnown RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 HSPH1Q92598 858 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 WNK4Q96J92 1243 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 STRA6Q9BX79 667 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 TRIM55Q9BYV6 548 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 JPH1Q9HDC5 661 aaPredicted RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 BATF3Q9NR55 127 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 SENP1Q9P0U3 644 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 UBIAD1Q9Y5Z9 338 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 DCAF8L1A6NGE4 600 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 ENO4A6NNW6 628 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 DNALI1O14645 258 aaPredicted RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 GYG2O15488 501 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 CST8O60676 142 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 UNGP13051 313 aaPredicted RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 ADRA1DP25100 572 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 CALRP27797 417 aaKnown RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 TFDP1Q14186 410 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 RCN2Q14257 317 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 Q3C1V9 767 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 TDRD10Q5VZ19 366 aaKnown RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 ATP11CQ8NB49 1132 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 PPFIBP2Q8ND30 876 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 DTX3LQ8TDB6 740 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 MAML1Q92585 1016 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 C12orf65Q9H3J6 166 aaKnown RBP11.07□□□□□ -0.64
COL3A1-202ENST00000317840 SLC9A2Q9UBY0 812 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 FBXO40Q9UH90 709 aa11.07□□□□□ -0.64
COL3A1-202ENST00000317840 VWA5AO00534 786 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 NPM3O75607 178 aaKnown RBP11.06□□□□□ -0.64
COL3A1-202ENST00000317840 UPP2O95045 317 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 TMEM191BP0C7N4 346 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 FDX1P10109 184 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 PTPRAP18433 802 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 IVDP26440 423 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 CTCFP49711 727 aaPredicted RBP11.06□□□□□ -0.64
COL3A1-202ENST00000317840 ZC3H18Q86VM9 953 aaKnown RBP11.06□□□□□ -0.64
COL3A1-202ENST00000317840 KCTD6Q8NC69 237 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 ZNF606Q8WXB4 792 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 CHMP2BQ9UQN3 213 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 COQ4Q9Y3A0 265 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 HAUS5O94927 633 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 CALB1P05937 261 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 TCF4P15884 667 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 GARTP22102 1010 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 TBXAS1P24557 533 aaPredicted RBP11.06□□□□□ -0.64
COL3A1-202ENST00000317840 HSD17B4P51659 736 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 RNF43Q68DV7 783 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 GPAT2Q6NUI2 795 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 RHBDF2Q6PJF5 856 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 BZW1Q7L1Q6 419 aaKnown RBP11.06□□□□□ -0.64
COL3A1-202ENST00000317840 THNSL1Q8IYQ7 743 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 KATNAL2Q8IYT4 538 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 PDCD7Q8N8D1 485 aaKnown RBP11.06□□□□□ -0.64
COL3A1-202ENST00000317840 NAF1Q96HR8 494 aaKnown RBP11.06□□□□□ -0.64
COL3A1-202ENST00000317840 MFSD14AQ96MC6 490 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 OSBPL1AQ9BXW6 950 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 CYP26B1Q9NR63 512 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 ARHGEF3Q9NR81 526 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 MYPNQ86TC9 1320 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 ADGRA3Q8IWK6 1321 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 H7C0C1 242 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 ZC3H11AO75152 810 aaKnown RBP eCLIP11.06□□□□□ -0.64
COL3A1-202ENST00000317840 ENTPD5O75356 428 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 ESRRAP11474 423 aaPredicted RBP11.06□□□□□ -0.64
COL3A1-202ENST00000317840 ATP5OP48047 213 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 SLC8A3P57103 927 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 MAP1SQ66K74 1059 aaPredicted RBP11.06□□□□□ -0.64
COL3A1-202ENST00000317840 SCYL2Q6P3W7 929 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 ACTL9Q8TC94 416 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 PPP1R13LQ8WUF5 828 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 SLCO2A1Q92959 643 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 TBC1D10AQ9BXI6 508 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 FOXP3Q9BZS1 431 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 PXMP2Q9NR77 195 aa11.06□□□□□ -0.64
COL3A1-202ENST00000317840 LIASO43766 372 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms