RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 GIPC2Q8TF65 315 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 C2orf15Q8WU43 125 aaKnown RBP21.01■□□□□ 0.95
LIME1-201ENST00000309546 IRF7Q92985 503 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 ANKRD36BP1Q96IX9 119 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 C7orf25Q9BPX7 421 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 MAGEF1Q9HAY2 307 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 TRPV4Q9HBA0 871 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 SPATA6Q9NWH7 488 aaPredicted RBP21.01■□□□□ 0.95
LIME1-201ENST00000309546 HSPBP1Q9NZL4 362 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 L1RE1Q9UN81 338 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 R3HCC1Q9Y3T6 440 aaKnown RBP21.01■□□□□ 0.95
LIME1-201ENST00000309546 SNX9Q9Y5X1 595 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 MYO15AQ9UKN7 3530 aa21■□□□□ 0.95
LIME1-201ENST00000309546 ZNF233A6NK53 670 aa21■□□□□ 0.95
LIME1-201ENST00000309546 ZNF263O14978 683 aa21■□□□□ 0.95
LIME1-201ENST00000309546 FGF19O95750 216 aa21■□□□□ 0.95
LIME1-201ENST00000309546 ACAT1P24752 427 aaKnown RBP21■□□□□ 0.95
LIME1-201ENST00000309546 HOXD13P35453 343 aa21■□□□□ 0.95
LIME1-201ENST00000309546 RBP5P82980 135 aa21■□□□□ 0.95
LIME1-201ENST00000309546 CYP4F8P98187 520 aa21■□□□□ 0.95
LIME1-201ENST00000309546 DNM1Q05193 864 aaKnown RBP21■□□□□ 0.95
LIME1-201ENST00000309546 SMARCB1Q12824 385 aa21■□□□□ 0.95
LIME1-201ENST00000309546 ARHGAP15Q53QZ3 475 aa21■□□□□ 0.95
LIME1-201ENST00000309546 GPR158Q5T848 1215 aa21■□□□□ 0.95
LIME1-201ENST00000309546 ZNF852Q6ZMS4 543 aa21■□□□□ 0.95
LIME1-201ENST00000309546 UNC13DQ70J99 1090 aa21■□□□□ 0.95
LIME1-201ENST00000309546 NELFCDQ8IXH7 590 aa21■□□□□ 0.95
LIME1-201ENST00000309546 YAF2Q8IY57 180 aa21■□□□□ 0.95
LIME1-201ENST00000309546 GCNAQ96QF7 691 aa21■□□□□ 0.95
LIME1-201ENST00000309546 CFAP45Q9UL16 551 aa21■□□□□ 0.95
LIME1-201ENST00000309546 MRPS17Q9Y2R5 130 aaKnown RBP21■□□□□ 0.95
LIME1-201ENST00000309546 PCDHB5Q9Y5E4 795 aa21■□□□□ 0.95
LIME1-201ENST00000309546 R4GN57 208 aa21■□□□□ 0.95
LIME1-201ENST00000309546 PTPRJQ12913 1337 aa21■□□□□ 0.95
LIME1-201ENST00000309546 CACNA1IQ9P0X4 2223 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 TNNC2P02585 160 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 HAPLN1P10915 354 aaPredicted RBP20.99■□□□□ 0.95
LIME1-201ENST00000309546 AFMP43652 599 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 SURF1Q15526 300 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 RESP18Q5W5W9 173 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 CNNM4Q6P4Q7 775 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 EPM2AIP1Q7L775 607 aaPredicted RBP20.99■□□□□ 0.95
LIME1-201ENST00000309546 MFSD6LQ8IWD5 586 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 OR5B17Q8NGF7 314 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 CXorf38Q8TB03 319 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 E2F7Q96AV8 911 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 RSPRY1Q96DX4 576 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 PI4K2AQ9BTU6 479 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 OSBPL6Q9BZF3 934 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 TMLHEQ9NVH6 421 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 INTS13Q9NVM9 706 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 DDX43Q9NXZ2 648 aaKnown RBP20.99■□□□□ 0.95
LIME1-201ENST00000309546 SIX4Q9UIU6 781 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 NDRG2Q9UN36 371 aaKnown RBP20.99■□□□□ 0.95
LIME1-201ENST00000309546 UBE4BO95155 1302 aa20.99■□□□□ 0.95
LIME1-201ENST00000309546 DPYSL4O14531 572 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 SP9P0CG40 484 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 CDC25CP30307 473 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 GPR15P49685 360 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 CYP2J2P51589 502 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 MYL7Q01449 175 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 ATL3Q6DD88 541 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 ARID3BQ8IVW6 561 aaPredicted RBP20.98■□□□□ 0.95
LIME1-201ENST00000309546 GRAMD1CQ8IYS0 662 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 ADGRF2Q8IZF7 708 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 TMEM86AQ8N2M4 240 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 RDH13Q8NBN7 331 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 ZNF507Q8TCN5 953 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 NELL2Q99435 816 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 MKNK1Q9BUB5 465 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 AGPAT3Q9NRZ7 376 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 PIAS3Q9Y6X2 628 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 ZFHX2Q9C0A1 2572 aaPredicted RBP20.98■□□□□ 0.95
LIME1-201ENST00000309546 OBSL1O75147 1896 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 DENND4CQ5VZ89 1909 aa20.98■□□□□ 0.95
LIME1-201ENST00000309546 ZNF638Q14966 1978 aaKnown RBP20.97■□□□□ 0.95
LIME1-201ENST00000309546 CLIC2O15247 247 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 NCAM2O15394 837 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 LAMTOR5O43504 91 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 PRPF40AO75400 957 aaKnown RBP20.97■□□□□ 0.95
LIME1-201ENST00000309546 MYO1EQ12965 1108 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 CUL4BQ13620 913 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 NFE2Q16621 373 aaPredicted RBP20.97■□□□□ 0.95
LIME1-201ENST00000309546 INTS6LQ5JSJ4 861 aaKnown RBP20.97■□□□□ 0.95
LIME1-201ENST00000309546 OSTM1Q86WC4 334 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 CEP57L1Q8IYX8 460 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 STKLD1Q8NE28 680 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 SCFD1Q8WVM8 642 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 ACBD6Q9BR61 282 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 KIAA1586Q9HCI6 787 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 SLC39A2Q9NP94 309 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 GDAP2Q9NXN4 497 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 FANCMQ8IYD8 2048 aa20.97■□□□□ 0.95
LIME1-201ENST00000309546 MAN2B1O00754 1011 aa20.96■□□□□ 0.95
LIME1-201ENST00000309546 HCRTO43612 131 aa20.96■□□□□ 0.95
LIME1-201ENST00000309546 DLATP10515 647 aaKnown RBP20.96■□□□□ 0.95
LIME1-201ENST00000309546 MAGEA9P43362 315 aa20.96■□□□□ 0.95
LIME1-201ENST00000309546 SNRNP35Q16560 246 aaKnown RBP20.96■□□□□ 0.95
LIME1-201ENST00000309546 DUOXA2Q1HG44 320 aa20.96■□□□□ 0.95
LIME1-201ENST00000309546 SDHAF4Q5VUM1 108 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms