RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ARL4AP40617 200 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 SLC1A1P43005 524 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 FASTKD5Q7L8L6 764 aaKnown RBP16.09■□□□□ 0.17
SHH-201ENST00000297261 MREGQ8N565 214 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 ZNF668Q96K58 619 aaPredicted RBP16.09■□□□□ 0.17
SHH-201ENST00000297261 AIPL1Q9NZN9 384 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 PCDHGC5Q9Y5F6 944 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 CASZ1Q86V15 1759 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 APRTP07741 180 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 PTPN4P29074 926 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 DSG1Q02413 1049 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 OTOP1Q7RTM1 612 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 THNSL1Q8IYQ7 743 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 ANKRD13AQ8IZ07 590 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 LRCH1Q9Y2L9 728 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 XPO1O14980 1071 aaKnown RBP16.09■□□□□ 0.17
SHH-201ENST00000297261 CALB1P05937 261 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 KRT3P12035 628 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 ENO3P13929 434 aaPredicted RBP16.09■□□□□ 0.17
SHH-201ENST00000297261 SLC12A1Q13621 1099 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 CRELD2Q6UXH1 353 aaPredicted RBP16.09■□□□□ 0.17
SHH-201ENST00000297261 PDZD4Q76G19 769 aaPredicted RBP16.09■□□□□ 0.17
SHH-201ENST00000297261 IRF2BP1Q8IU81 584 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 GPC2Q8N158 579 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 GLIS3Q8NEA6 775 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 PCMTD2Q9NV79 361 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 C2CD2Q9Y426 696 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 MYH7P12883 1935 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 DNM1LO00429 736 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 NEMP1O14524 444 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 AIM2O14862 343 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 IFRD2Q12894 506 aaPredicted RBP16.09■□□□□ 0.17
SHH-201ENST00000297261 C1orf228Q6PIY5 440 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 ACAD11Q709F0 780 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 RIBC1Q8N443 379 aaPredicted RBP16.09■□□□□ 0.17
SHH-201ENST00000297261 PARD3BQ8TEW8 1205 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 RPS6KC1Q96S38 1066 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 HSPBP1Q9NZL4 362 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 AKAP11Q9UKA4 1901 aa16.09■□□□□ 0.17
SHH-201ENST00000297261 HSPA8P11142 646 aaKnown RBP16.08■□□□□ 0.17
SHH-201ENST00000297261 PCYT1AP49585 367 aa16.08■□□□□ 0.17
SHH-201ENST00000297261 EIF3EP60228 445 aaKnown RBP16.08■□□□□ 0.17
SHH-201ENST00000297261 PSMC1P62191 440 aaKnown RBP16.08■□□□□ 0.17
SHH-201ENST00000297261 NT5DC3Q86UY8 548 aa16.08■□□□□ 0.17
SHH-201ENST00000297261 RBBP8NLQ8NC74 664 aaPredicted RBP16.08■□□□□ 0.17
SHH-201ENST00000297261 HEXIM2Q96MH2 286 aaKnown RBP16.08■□□□□ 0.17
SHH-201ENST00000297261 RNPEPL1Q9HAU8 725 aa16.08■□□□□ 0.17
SHH-201ENST00000297261 FAM53CQ9NYF3 392 aa16.08■□□□□ 0.17
SHH-201ENST00000297261 IRS2Q9Y4H2 1338 aa16.08■□□□□ 0.17
SHH-201ENST00000297261 ZBTB39O15060 712 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 MGEA5O60502 916 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 PTPRAP18433 802 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 TCN1P20061 433 aaPredicted RBP16.08■□□□□ 0.16
SHH-201ENST00000297261 BCAR1P56945 870 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 ZNF200P98182 395 aaPredicted RBP16.08■□□□□ 0.16
SHH-201ENST00000297261 KCTD17Q8N5Z5 321 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 TRPM4Q8TD43 1214 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 EME1Q96AY2 570 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 ANKRD36BP1Q96IX9 119 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 ADPGKQ9BRR6 497 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 OSBPL7Q9BZF2 842 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 PXMP2Q9NR77 195 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 RAB6BQ9NRW1 208 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 MED7O43513 233 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 KRT7P08729 469 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 PCNX4Q63HM2 1172 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 C2orf69Q8N8R5 385 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 ACSF2Q96CM8 615 aaPredicted RBP16.08■□□□□ 0.16
SHH-201ENST00000297261 ING2Q9H160 280 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 FAM96AQ9H5X1 160 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 SLC38A10Q9HBR0 1119 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 CTNNAL1Q9UBT7 734 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 SHANK3Q9BYB0 1731 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 ADM5C9JUS6 153 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 SLITRK3O94933 977 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 MYL2P10916 166 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 PRKCEQ02156 737 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 ITKQ08881 620 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 PRPSAP1Q14558 356 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 SLC44A4Q53GD3 710 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 SLC25A41Q8N5S1 370 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 GPRC5CQ9NQ84 441 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 PARVAQ9NVD7 372 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 GPRC5DQ9NZD1 345 aa16.08■□□□□ 0.16
SHH-201ENST00000297261 DDX3XO00571 662 aaKnown RBP eCLIP16.07■□□□□ 0.16
SHH-201ENST00000297261 ATP4AP20648 1035 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 CDH6P55285 790 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 MORF4L2Q15014 288 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 XKR3Q5GH77 459 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 SLC20A1Q8WUM9 679 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 ATXN2LQ8WWM7 1075 aaKnown RBP16.07■□□□□ 0.16
SHH-201ENST00000297261 TMEM143Q96AN5 459 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 INPP4AQ96PE3 977 aaPredicted RBP16.07■□□□□ 0.16
SHH-201ENST00000297261 MYLK2Q9H1R3 596 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 KRT82Q9NSB4 513 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 ETAA1Q9NY74 926 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 GTF3C4Q9UKN8 822 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 ASTN2O75129 1339 aaPredicted RBP16.07■□□□□ 0.16
SHH-201ENST00000297261 UBE4BO95155 1302 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 EIF3DO15371 548 aaKnown RBP eCLIP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms