RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 KPNA7A9QM74 516 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 F8W810 466 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 PCBP1Q15365 356 aaKnown RBP eCLIP17.5■□□□□ 0.39
USP4-201ENST00000265560 ATP13A4Q4VNC1 1196 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 PPP1R26Q5T8A7 1209 aaPredicted RBP17.5■□□□□ 0.39
USP4-201ENST00000265560 USP38Q8NB14 1042 aa17.5■□□□□ 0.39
USP4-201ENST00000265560 RNPC3Q96LT9 517 aaKnown RBP17.5■□□□□ 0.39
USP4-201ENST00000265560 A8MXQ7 604 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 ATP2C2O75185 946 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 GRAP2O75791 330 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 MYBL2P10244 700 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 PYGMP11217 842 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 CKBP12277 381 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 CLCNKBP51801 687 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 RABGGTBP53611 331 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 PSMC1P62191 440 aaKnown RBP17.49■□□□□ 0.39
USP4-201ENST00000265560 NT5C1AQ9BXI3 368 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 UVRAGQ9P2Y5 699 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 TSPAN16Q9UKR8 245 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 PIRO00625 290 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 GPR182O15218 404 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 YWHAEP62258 255 aaKnown RBP17.49■□□□□ 0.39
USP4-201ENST00000265560 NKX3-2P78367 333 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 LIN9Q5TKA1 542 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 PHF13Q86YI8 300 aaPredicted RBP17.49■□□□□ 0.39
USP4-201ENST00000265560 SLAIN1Q8ND83 568 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 PIWIL1Q96J94 861 aaKnown RBP17.49■□□□□ 0.39
USP4-201ENST00000265560 VRTNQ9H8Y1 702 aa17.49■□□□□ 0.39
USP4-201ENST00000265560 KRIT1O00522 736 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 CCDC130P13994 396 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 LILRA4P59901 499 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 OGDHQ02218 1023 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 C3orf58Q8NDZ4 430 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.48■□□□□ 0.39
USP4-201ENST00000265560 L1RE1Q9UN81 338 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 F8VP50 259 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 ADORA2BP29275 332 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 LONRF2Q1L5Z9 754 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 SGO2Q562F6 1265 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 DCUN1D2Q6PH85 259 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 TRIM72Q6ZMU5 477 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 NT5DC4Q86YG4 428 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 RPS6KC1Q96S38 1066 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 SELENOOQ9BVL4 669 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 ERVK-5Q9HDB9 667 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 CEP83Q9Y592 693 aa17.48■□□□□ 0.39
USP4-201ENST00000265560 RANBP2P49792 3224 aaKnown RBP17.48■□□□□ 0.39
USP4-201ENST00000265560 ERBB2P04626 1255 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 TAS2R40P59535 323 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 POU5F1Q01860 360 aaKnown RBP17.47■□□□□ 0.39
USP4-201ENST00000265560 TRIM71Q2Q1W2 868 aaKnown RBP17.47■□□□□ 0.39
USP4-201ENST00000265560 ZFYVE27Q5T4F4 411 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 CYP3A43Q9HB55 503 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 ATP8B3O60423 1300 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 ATF7P17544 494 aaPredicted RBP17.47■□□□□ 0.39
USP4-201ENST00000265560 C11orf63Q6NUN7 778 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 DNAJC24Q6P3W2 148 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 JOSD2Q8TAC2 188 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 KBTBD7Q8WVZ9 684 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.47■□□□□ 0.393e-7■■■□□ 18.7
USP4-201ENST00000265560 BEGAINQ9BUH8 593 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 RNF208Q9H0X6 261 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 TSPYL2Q9H2G4 693 aaPredicted RBP17.47■□□□□ 0.39
USP4-201ENST00000265560 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.47■□□□□ 0.39
USP4-201ENST00000265560 PGRMC1O00264 195 aaKnown RBP17.47■□□□□ 0.39
USP4-201ENST00000265560 KCNE1P15382 129 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 RFC1P35251 1148 aaPredicted RBP17.47■□□□□ 0.39
USP4-201ENST00000265560 PEX5P50542 639 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 PTK7Q13308 1070 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 GOLGA7BQ2TAP0 167 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 WSCD1Q658N2 575 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 C8orf74Q6P047 294 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 PBKQ96KB5 322 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 PPP1R10Q96QC0 940 aaKnown RBP17.47■□□□□ 0.39
USP4-201ENST00000265560 FAM118BQ9BPY3 351 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 DERAQ9Y315 318 aa17.47■□□□□ 0.39
USP4-201ENST00000265560 GLI1P08151 1106 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 GNL1P36915 607 aaPredicted RBP17.46■□□□□ 0.39
USP4-201ENST00000265560 TAF6P49848 677 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 HADHBP55084 474 aaKnown RBP17.46■□□□□ 0.39
USP4-201ENST00000265560 TAF5Q15542 800 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 PLEKHA7Q6IQ23 1121 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 RTN4RL1Q86UN2 441 aaPredicted RBP17.46■□□□□ 0.39
USP4-201ENST00000265560 ZDHHC14Q8IZN3 488 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 MSANTD4Q8NCY6 345 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 HEMGNQ9BXL5 484 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 B3GNT5Q9BYG0 378 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 PQBP1O60828 265 aaKnown RBP17.46■□□□□ 0.39
USP4-201ENST00000265560 MTA2O94776 668 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 THP07101 528 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 PAEPP09466 180 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 C1QBPQ07021 282 aaKnown RBP17.46■□□□□ 0.39
USP4-201ENST00000265560 ZNF252P-AS1Q0IIN9 211 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 INCA1Q0VD86 236 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 TXNRD3NBQ6F5E7 133 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 FEZF2Q8TBJ5 459 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 CD101Q93033 1021 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 AVENQ9NQS1 362 aaPredicted RBP17.46■□□□□ 0.39
USP4-201ENST00000265560 PARVAQ9NVD7 372 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 AMACRQ9UHK6 382 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms