RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 CASP7P55210 303 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 LRRC36Q1X8D7 754 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 C16orf89Q6UX73 402 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 LRRC71Q8N4P6 559 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 PCYOX1LQ8NBM8 494 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 CALML6Q8TD86 181 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 HPDLQ96IR7 371 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 TMEM39BQ9GZU3 492 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 ERAP1Q9NZ08 941 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 POLIQ9UNA4 740 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 SLIT1O75093 1534 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 TCRBV5S4A2TA0A5A2 114 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 MYO1DO94832 1006 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 ESRRBO95718 433 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 SLC25A27O95847 323 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 CTCFP49711 727 aaPredicted RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 MRPS35P82673 323 aaKnown RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 TBX2Q13207 712 aaPredicted RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 LAMB3Q13751 1172 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 KRT33BQ14525 404 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 ITIH4Q14624 930 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 CYTH1Q15438 398 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 AK9Q5TCS8 1911 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 NOP9Q86U38 636 aaKnown RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 TMC2Q8TDI7 906 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 EPS8L3Q8TE67 593 aaKnown RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 ATG4AQ8WYN0 398 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 EME1Q96AY2 570 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 MTMR8Q96EF0 704 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 LBHD1Q9BQE6 289 aaPredicted RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 NOD2Q9HC29 1040 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 METTL5Q9NRN9 209 aaKnown RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 ZBTB22O15209 634 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 GLI1P08151 1106 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 FOXD4Q12950 439 aaPredicted RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 ELMSAN1Q6PJG2 1045 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 KDELC2Q7Z4H8 507 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 SPATA2LQ8IUW3 424 aaPredicted RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 TEX9Q8N6V9 391 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 TMA16Q96EY4 203 aaKnown RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 OSGEPQ9NPF4 335 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.23□□□□□ -0.61
CD44-201ENST00000263398 MAP3K20Q9NYL2 800 aaKnown RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 ABT1Q9ULW3 272 aaKnown RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 ADCY3O60266 1144 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 PMS1P54277 932 aaKnown RBP11.22□□□□□ -0.61
CD44-201ENST00000263398 MCL1Q07820 350 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 COBLL1Q53SF7 1204 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 DCAF6Q58WW2 860 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 EFCAB12Q6NXP0 572 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 UBA3Q8TBC4 463 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 SH3TC2Q8TF17 1288 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 ZNF669Q96BR6 464 aaPredicted RBP11.22□□□□□ -0.61
CD44-201ENST00000263398 GMCL1Q96IK5 515 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 PPP1R36Q96LQ0 422 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 RTFDC1Q9BY42 306 aaPredicted RBP11.22□□□□□ -0.61
CD44-201ENST00000263398 CXorf56Q9H5V9 222 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 CCDC134Q9H6E4 229 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 C20orf96Q9NUD7 363 aaPredicted RBP11.22□□□□□ -0.61
CD44-201ENST00000263398 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.22□□□□□ -0.61
CD44-201ENST00000263398 SCHIP1Q9P0W5 487 aaPredicted RBP11.22□□□□□ -0.61
CD44-201ENST00000263398 PCDHGB4Q9UN71 923 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 JCADQ9P266 1359 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 AIM2O14862 343 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 TLR2O60603 784 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 CAND2O75155 1236 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 KCNA3P22001 575 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 PCSK1P29120 753 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 NFIAQ12857 509 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 CHI3L2Q15782 390 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 CYP4A22Q5TCH4 519 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 MROH9Q5TGP6 573 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 KIAA0895Q8NCT3 520 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 RUBCNLQ9H714 662 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 GPRC5CQ9NQ84 441 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 RNF181Q9P0P0 153 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 SALL1Q9NSC2 1324 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 LOC100653049A0A140TA62 436 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 CCDC78A2IDD5 438 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 KRT34O76011 436 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 CSPG5O95196 566 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 PTGER2P43116 358 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 VEPH1Q14D04 833 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 NAPEPLDQ6IQ20 393 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 ILDR1Q86SU0 546 aaPredicted RBP11.22□□□□□ -0.61
CD44-201ENST00000263398 ACER1Q8TDN7 264 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 USP33Q8TEY7 942 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 EHD4Q9H223 541 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 CDC42EP4Q9H3Q1 356 aaKnown RBP11.22□□□□□ -0.61
CD44-201ENST00000263398 ELP3Q9H9T3 547 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 PHTF1Q9UMS5 762 aa11.22□□□□□ -0.61
CD44-201ENST00000263398 DYNC1LI2O43237 492 aaPredicted RBP11.21□□□□□ -0.61
CD44-201ENST00000263398 RRM1P23921 792 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 HMOX2P30519 316 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 GRIK1P39086 918 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 NPTX2P47972 431 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 PDAP1Q13442 181 aaKnown RBP11.21□□□□□ -0.61
CD44-201ENST00000263398 Q4G0T1 1027 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 TFDP3Q5H9I0 405 aa11.21□□□□□ -0.61
CD44-201ENST00000263398 DAB2IPQ5VWQ8 1189 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms