RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 STXBP2Q15833 593 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 PKN2Q16513 984 aaKnown RBP19.74■□□□□ 0.75
CPSF3-201ENST00000238112 ZNF394Q53GI3 561 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 RNASEH2BQ5TBB1 312 aaKnown RBP19.74■□□□□ 0.75
CPSF3-201ENST00000238112 ASRGL1Q7L266 308 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 WDR49Q8IV35 697 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 BRSK2Q8IWQ3 736 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 NKD2Q969F2 451 aaPredicted RBP19.74■□□□□ 0.75
CPSF3-201ENST00000238112 TMEM121Q9BTD3 319 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 PPCSQ9HAB8 311 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 PCDH9Q9HC56 1237 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 ADAMTS5Q9UNA0 930 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 CEP83Q9Y592 693 aa19.74■□□□□ 0.75
CPSF3-201ENST00000238112 MAGEB2O15479 319 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 ATG7O95352 703 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 CDKN2BP42772 138 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 SLC18A1P54219 525 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 ZNF280AP59817 542 aaPredicted RBP19.73■□□□□ 0.75
CPSF3-201ENST00000238112 PDIA2Q13087 525 aaKnown RBP19.73■□□□□ 0.75
CPSF3-201ENST00000238112 TXNRD3NBQ6F5E7 133 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 GPAT2Q6NUI2 795 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 C4orf33Q8N1A6 199 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 AGAP11Q8TF27 550 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 STAMBPL1Q96FJ0 436 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 TCHPQ9BT92 498 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 ZNF518BQ9C0D4 1074 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 MTMR12Q9C0I1 747 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 KIF9Q9HAQ2 790 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 TXLNGQ9NUQ3 528 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 PHTF1Q9UMS5 762 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 TCRBV5S1A1TA0A578 114 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 ALOX15BO15296 676 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 CCNB1P14635 433 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 PTPRAP18433 802 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 RFC5P40937 340 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 MSH2P43246 934 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 SCARA3Q6AZY7 606 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 ERICH1Q86X53 443 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 DENND1AQ8TEH3 1009 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 MRRFQ96E11 262 aaKnown RBP19.73■□□□□ 0.75
CPSF3-201ENST00000238112 NIFKQ9BYG3 293 aaKnown RBP19.73■□□□□ 0.75
CPSF3-201ENST00000238112 NIF3L1Q9GZT8 377 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 CISHQ9NSE2 258 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 TRIM33Q9UPN9 1127 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 AGTPBP1Q9UPW5 1226 aa19.73■□□□□ 0.75
CPSF3-201ENST00000238112 MYH9P35579 1960 aaKnown RBP19.72■□□□□ 0.75
CPSF3-201ENST00000238112 ADCY3O60266 1144 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 UNC5CO95185 931 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 CA4P22748 312 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 GBP2P32456 591 aaPredicted RBP19.72■□□□□ 0.75
CPSF3-201ENST00000238112 TNFSF9P41273 254 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 MYL6P60660 151 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 LACTBP83111 547 aaPredicted RBP19.72■□□□□ 0.75
CPSF3-201ENST00000238112 CAPSQ13938 189 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 WDR72Q3MJ13 1102 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 ZBTB33Q86T24 672 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 LRRC8CQ8TDW0 803 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 WRNIP1Q96S55 665 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 EBF2Q9HAK2 575 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 PSMC3IPQ9P2W1 217 aaPredicted RBP19.72■□□□□ 0.75
CPSF3-201ENST00000238112 SLC24A2Q9UI40 661 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 HACL1Q9UJ83 578 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 L3MBTL1Q9Y468 752 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 PARP14Q460N5 1801 aa19.72■□□□□ 0.75
CPSF3-201ENST00000238112 ACCSLQ4AC99 568 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 CYP4A22Q5TCH4 519 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 PCGF5Q86SE9 256 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 NIPA2Q8N8Q9 360 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 PRCCQ92733 491 aaPredicted RBP19.71■□□□□ 0.75
CPSF3-201ENST00000238112 THOC1Q96FV9 657 aaKnown RBP19.71■□□□□ 0.75
CPSF3-201ENST00000238112 ETNK1Q9HBU6 452 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 USH1CQ9Y6N9 552 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 COL11A1P12107 1806 aaPredicted RBP19.71■□□□□ 0.75
CPSF3-201ENST00000238112 LOC102724159A0A0B4J2E5 919 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 GOLGA8SH3BPF8 625 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 GOLGA8MH3BSY2 632 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 CCND1P24385 295 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 RPA3P35244 121 aaPredicted RBP19.71■□□□□ 0.75
CPSF3-201ENST00000238112 ATP11AP98196 1134 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 MYO1EQ12965 1108 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 TRPC3Q13507 836 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 PWP2Q15269 919 aaKnown RBP19.71■□□□□ 0.75
CPSF3-201ENST00000238112 PDK4Q16654 411 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 HIF1AQ16665 826 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 CCDC142Q17RM4 750 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 PPP1R15BQ5SWA1 713 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 ZPBP2Q6X784 338 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 RGS9BPQ6ZS82 235 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 VSIG1Q86XK7 387 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 SPOCK2Q92563 424 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 C12orf42Q96LP6 360 aa19.71■□□□□ 0.75
CPSF3-201ENST00000238112 RAB3IPQ96QF0 476 aaPredicted RBP19.71■□□□□ 0.75
CPSF3-201ENST00000238112 PHIPQ8WWQ0 1821 aa19.7■□□□□ 0.74
CPSF3-201ENST00000238112 EIF4BP23588 611 aaKnown RBP19.7■□□□□ 0.74
CPSF3-201ENST00000238112 ICAM3P32942 547 aa19.7■□□□□ 0.74
CPSF3-201ENST00000238112 DYNLT1P63172 113 aa19.7■□□□□ 0.74
CPSF3-201ENST00000238112 GRM1Q13255 1194 aa19.7■□□□□ 0.74
CPSF3-201ENST00000238112 SGSM1Q2NKQ1 1148 aa19.7■□□□□ 0.74
CPSF3-201ENST00000238112 HHATQ5VTY9 493 aa19.7■□□□□ 0.74
CPSF3-201ENST00000238112 SAMD7Q7Z3H4 446 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms