RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 GRID1Q9ULK0 1009 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 KCNA2P16389 499 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 TBXAS1P24557 533 aaPredicted RBP10.89□□□□□ -0.67
VCL-201ENST00000211998 ATP6V1E1P36543 226 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 SERPINB5P36952 375 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 SARSP49591 514 aaKnown RBP10.89□□□□□ -0.67
VCL-201ENST00000211998 TRAF2Q12933 501 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 FAM182BQ5T319 152 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 MTHFD1LQ6UB35 978 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 ZBTB49Q6ZSB9 765 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 RCOR2Q8IZ40 523 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 PHF21AQ96BD5 680 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 FHDC1Q9C0D6 1143 aaPredicted RBP10.89□□□□□ -0.67
VCL-201ENST00000211998 REXO4Q9GZR2 422 aaKnown RBP10.89□□□□□ -0.67
VCL-201ENST00000211998 LACRTQ9GZZ8 138 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 PLGRKTQ9HBL7 147 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 TRIM39Q9HCM9 518 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 STK39Q9UEW8 545 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 ALG6Q9Y672 507 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 MROH7Q68CQ1 1323 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 PYGMP11217 842 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 MTM1Q13496 603 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 AASDHQ4L235 1098 aaPredicted RBP10.89□□□□□ -0.67
VCL-201ENST00000211998 PADI6Q6TGC4 694 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 STOX1Q6ZVD7 989 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 CDKL3Q8IVW4 592 aaPredicted RBP10.89□□□□□ -0.67
VCL-201ENST00000211998 C18orf8Q96DM3 657 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 TRIM9Q9C026 710 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 HACD3Q9P035 362 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 E2F8A0AVK6 867 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 CYP26A1O43174 497 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 CBFA2T3O75081 653 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 THRAP10827 490 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 GUCY1A2P33402 732 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 AQP5P55064 265 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 EXOSC10Q01780 885 aaKnown RBP10.89□□□□□ -0.67
VCL-201ENST00000211998 LAMC2Q13753 1193 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 BEST2Q8NFU1 509 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 TNIP2Q8NFZ5 429 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 TRIM8Q9BZR9 551 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 FAM49AQ9H0Q0 323 aaPredicted RBP10.89□□□□□ -0.67
VCL-201ENST00000211998 RPAP3Q9H6T3 665 aaPredicted RBP10.89□□□□□ -0.67
VCL-201ENST00000211998 ATF5Q9Y2D1 282 aaPredicted RBP10.89□□□□□ -0.67
VCL-201ENST00000211998 MYRFQ9Y2G1 1151 aa10.89□□□□□ -0.67
VCL-201ENST00000211998 ZSCAN5CA6NGD5 496 aaPredicted RBP10.88□□□□□ -0.67
VCL-201ENST00000211998 FAM196BA6NMK8 535 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 RHOBTB3O94955 611 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 TFRCP02786 760 aaKnown RBP10.88□□□□□ -0.67
VCL-201ENST00000211998 IGKV5-2P06315 115 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 RAG1P15918 1043 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 ZNF23P17027 643 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 USP49Q70CQ1 688 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 STX19Q8N4C7 294 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 TPCN2Q8NHX9 752 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 UVRAGQ9P2Y5 699 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 USP17L10C9JJH3 530 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 ATP6V1G1O75348 118 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 S100A1P23297 94 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 IFNA8P32881 189 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 SESN2P58004 480 aaPredicted RBP10.88□□□□□ -0.67
VCL-201ENST00000211998 CBX3Q13185 183 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 ACAP1Q15027 740 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 SNRNP48Q6IEG0 339 aaKnown RBP10.88□□□□□ -0.67
VCL-201ENST00000211998 TATDN2Q93075 761 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 STK33Q9BYT3 514 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 CEP44Q9C0F1 390 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 CDV3Q9UKY7 258 aaKnown RBP10.88□□□□□ -0.67
VCL-201ENST00000211998 SOX13Q9UN79 622 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 CPDO75976 1380 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 TMEM247A6NEH6 219 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 P4HBP07237 508 aaKnown RBP10.88□□□□□ -0.67
VCL-201ENST00000211998 TMEM253P0C7T8 217 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 CCDC130P13994 396 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 CHN2P52757 468 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 TTLL4Q14679 1199 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 ZNF699Q32M78 642 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 ARMC4Q5T2S8 1044 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 THNSL1Q8IYQ7 743 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 FBXO25Q8TCJ0 367 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 DIS3LQ8TF46 1054 aaKnown RBP10.88□□□□□ -0.67
VCL-201ENST00000211998 GIPC3Q8TF64 312 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 DDX50Q9BQ39 737 aaKnown RBP10.88□□□□□ -0.67
VCL-201ENST00000211998 CDC42EP4Q9H3Q1 356 aaKnown RBP10.88□□□□□ -0.67
VCL-201ENST00000211998 PARVAQ9NVD7 372 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 COPG2Q9UBF2 871 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 KLHL20Q9Y2M5 609 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 SUGT1Q9Y2Z0 365 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 HUS1O60921 280 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 GNA15P30679 374 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 MAPK10P53779 464 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 NEDD8Q15843 81 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 RBBP7Q16576 425 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 SLC30A5Q8TAD4 765 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 NEUROG2Q9H2A3 272 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 DCP1AQ9NPI6 582 aaPredicted RBP10.88□□□□□ -0.67
VCL-201ENST00000211998 ZNF302Q9NR11 478 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 TNS3Q68CZ2 1445 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 TRIM49D1C9J1S8 452 aa10.88□□□□□ -0.67
VCL-201ENST00000211998 PHGDHO43175 533 aaKnown RBP10.88□□□□□ -0.67
VCL-201ENST00000211998 LGR5O75473 907 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms