RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	CTNND1	O60716	968 aa	Known RBP	3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	UBXN7	O94888	489 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	ZFPL1	O95159	310 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	LMNA	P02545	664 aa	Known RBP	3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	HRG	P04196	525 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	FOLR3	P41439	243 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	NXPH1	P58417	271 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	ERCC6L	Q2NKX8	1250 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	AMOT	Q4VCS5	1084 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	CCDC157	Q569K6	752 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	FAM160B1	Q5W0V3	765 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	TAPT1	Q6NXT6	567 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	VWA1	Q6PCB0	445 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857		Q6ZNX1	250 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	PPP1R3B	Q86XI6	285 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	TICAM2	Q86XR7	235 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	KBTBD7	Q8WVZ9	684 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	JDP2	Q8WYK2	163 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	SNX19	Q92543	992 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	CAVIN3	Q969G5	261 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	LRIG1	Q96JA1	1093 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	PGBD1	Q96JS3	809 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857		Q96MF0	132 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	MOGAT1	Q96PD6	335 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	ACO2	Q99798	780 aa	Known RBP	3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	RSAD1	Q9HA92	442 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	PIH1D1	Q9NWS0	290 aa	Known RBP	3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	VSX1	Q9NZR4	365 aa	Predicted RBP	3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	TES	Q9UGI8	421 aa	Known RBP	3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	CDYL	Q9Y232	598 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	PLEKHM1	Q9Y4G2	1056 aa		3.86	□□□□□ -1.79
CNOT1-223	ENST00000628857	FAM227A	F5H4B4	570 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	FRS3	O43559	492 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	TRIAP1	O43715	76 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	MARCH6	O60337	910 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	SCGB1D2	O95969	90 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	CENPB	P07199	599 aa	Predicted RBP	3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	CYP2C9	P11712	490 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	TYRP1	P17643	537 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	HTR1B	P28222	390 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	ARFIP2	P53365	341 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	INHBE	P58166	350 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	RAB1A	P62820	205 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	ITIH3	Q06033	890 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	FOXI1	Q12951	378 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	ZNF267	Q14586	743 aa	Predicted RBP	3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	GEN1	Q17RS7	908 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	PRR16	Q569H4	304 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	KHDC1L	Q5JSQ8	128 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	SFRP4	Q6FHJ7	346 aa	Predicted RBP	3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	SRGAP1	Q7Z6B7	1085 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	DAAM2	Q86T65	1068 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	KIAA0319L	Q8IZA0	1049 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	ADGRG5	Q8IZF4	528 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	FAM109A	Q8N4B1	249 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	CAMKK1	Q8N5S9	505 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	BEND2	Q8NDZ0	799 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	TNPO1	Q92973	898 aa	Known RBP	3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	SUCLG2	Q96I99	432 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	PDLIM2	Q96JY6	352 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	PSMD1	Q99460	953 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	AGAP2	Q99490	1192 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	LRFN3	Q9BTN0	628 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	C1orf43	Q9BWL3	253 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	PCGF6	Q9BYE7	350 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	DPH1	Q9BZG8	443 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	TINAGL1	Q9GZM7	467 aa	Predicted RBP	3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	ALG13	Q9NP73	1137 aa	Known RBP	3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	CASS4	Q9NQ75	786 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	ANLN	Q9NQW6	1124 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	CNNM1	Q9NRU3	951 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	L1RE1	Q9UN81	338 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	PCDHA1	Q9Y5I3	950 aa		3.85	□□□□□ -1.79
CNOT1-223	ENST00000628857	ZNF785	A8K8V0	405 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	PEX1	O43933	1283 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	XRCC6	P12956	609 aa	Known RBP eCLIP	3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	GATA3	P23771	443 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	VIPR2	P41587	438 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	RARRES1	P49788	294 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	TOB1	P50616	345 aa	Predicted RBP	3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	ZNF135	P52742	658 aa	Predicted RBP	3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	WNT3	P56703	355 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	SOX8	P57073	446 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	ZNF169	Q14929	603 aa	Predicted RBP	3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	SMN1	Q16637	294 aa	Known RBP	3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	OLFML1	Q6UWY5	402 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	CHST15	Q7LFX5	561 aa	Predicted RBP	3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	MYO1H	Q8N1T3	1032 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	PLBD2	Q8NHP8	589 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	CAGE1	Q8TC20	777 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	MRGPRX1	Q96LB2	322 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	AIFM2	Q9BRQ8	373 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	RAD54B	Q9Y620	910 aa		3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857	ARID4B	Q4LE39	1312 aa	Predicted RBP	3.84	□□□□□ -1.79
CNOT1-223	ENST00000628857		A0A0B4J269	797 aa		3.83	□□□□□ -1.8
CNOT1-223	ENST00000628857	WDR27	A2RRH5	827 aa		3.83	□□□□□ -1.8
CNOT1-223	ENST00000628857	TOR1B	O14657	336 aa		3.83	□□□□□ -1.8
CNOT1-223	ENST00000628857	YY2	O15391	372 aa		3.83	□□□□□ -1.8
CNOT1-223	ENST00000628857	PHGDH	O43175	533 aa	Known RBP	3.83	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms