RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 WDR78Q5VTH9 848 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 CATSPERGQ6ZRH7 1159 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 SYDE1Q6ZW31 735 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 TRAPPC12Q8WVT3 735 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 SPOCK2Q92563 424 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 NLRP4Q96MN2 994 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 SLITRK1Q96PX8 696 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 DHX33Q9H6R0 707 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 CISHQ9NSE2 258 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 PCSK1NQ9UHG2 260 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 TRIM33Q9UPN9 1127 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 MAFBQ9Y5Q3 323 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 NFKBIEO00221 500 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 CDH16O75309 829 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 TJP3O95049 919 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 UBA1P22314 1058 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 TBXAS1P24557 533 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 KCNJ2P63252 427 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 ITIH4Q14624 930 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 LACTB2Q53H82 288 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 ERICH1Q86X53 443 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 RHPN2Q8IUC4 686 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 EMC1Q8N766 993 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 CEP120Q8N960 986 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 SYNCQ9H7C4 482 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 CNTNAP2Q9UHC6 1331 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 CHUKO15111 745 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 LIASO43766 372 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 SUN1O94901 812 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 MMP8P22894 467 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 TCF7P36402 384 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 ARL2P36404 184 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 CDH8P55286 799 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 TGFB2P61812 414 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 CLDN10P78369 228 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 CAV1Q03135 178 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 GAD2Q05329 585 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 ZNF252P-AS1Q0IIN9 211 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 PTP4A2Q12974 167 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 ZNF568Q3ZCX4 644 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 TRIM72Q6ZMU5 477 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 PHF13Q86YI8 300 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 TFAP2BQ92481 460 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 HOXC10Q9NYD6 342 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 NFASCO94856 1347 aa13.66□□□□□ -0.22
CCDC88A-214ENST00000621814 ZNF280AP59817 542 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 ELF3P78545 371 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 TREML2Q5T2D2 321 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 SPATA21Q7Z572 469 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 FAM228AQ86W67 206 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 R3HDMLQ9H3Y0 253 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 ECT2Q9H8V3 914 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 NRBP2Q9NSY0 501 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 POLIQ9UNA4 740 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 WDR91A4D1P6 747 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 TMEM191CA6NGB0 347 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 INO80B-WBP1J3KQ70 363 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 TMEM191BP0C7N4 346 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 KLRC2P26717 231 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 NRLP54845 237 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 LACTBP83111 547 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 C1QBPQ07021 282 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 PDIA2Q13087 525 aaKnown RBP13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 DNAJC3Q13217 504 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 SPOCD1Q6ZMY3 1216 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 ARHGEF18Q6ZSZ5 1173 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 RCOR2Q8IZ40 523 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 PCYT2Q99447 389 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 PITPNM3Q9BZ71 974 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 INO80BQ9C086 356 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 LOXHD1Q8IVV2 1947 aa13.65□□□□□ -0.22
CCDC88A-214ENST00000621814 ADCY3O60266 1144 aa13.65□□□□□ -0.23
CCDC88A-214ENST00000621814 PGK2P07205 417 aa13.65□□□□□ -0.23
CCDC88A-214ENST00000621814 PSMA2P25787 234 aa13.65□□□□□ -0.23
CCDC88A-214ENST00000621814 PKN2Q16513 984 aaKnown RBP13.65□□□□□ -0.23
CCDC88A-214ENST00000621814 TMEM35BQ8NCS4 154 aa13.65□□□□□ -0.23
CCDC88A-214ENST00000621814 BBOF1Q8ND07 529 aa13.65□□□□□ -0.23
CCDC88A-214ENST00000621814 TRPM4Q8TD43 1214 aa13.65□□□□□ -0.23
CCDC88A-214ENST00000621814 CKAP2Q8WWK9 683 aa13.65□□□□□ -0.23
CCDC88A-214ENST00000621814 RMDN2Q96LZ7 410 aa13.65□□□□□ -0.23
CCDC88A-214ENST00000621814 GGA3Q9NZ52 723 aa13.65□□□□□ -0.23
CCDC88A-214ENST00000621814 AFG3L2Q9Y4W6 797 aa13.65□□□□□ -0.23
CCDC88A-214ENST00000621814 B4GALT5O43286 388 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 RFC1P35251 1148 aaPredicted RBP13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 IGBP1P78318 339 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 XRCC4Q13426 336 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 ZNF699Q32M78 642 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 RBM41Q96IZ5 413 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 STYXL1Q9Y6J8 313 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 ZNFX1Q9P2E3 1918 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 GOLGA8RI6L899 631 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 RPSAP08865 295 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 GHRP10912 638 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 FOXN2P32314 431 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 WDR72Q3MJ13 1102 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 DENND1BQ6P3S1 775 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 WDTC1Q8N5D0 677 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 FITM2Q8N6M3 262 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 CFAP57Q96MR6 1250 aa13.64□□□□□ -0.23
CCDC88A-214ENST00000621814 KLF6Q99612 283 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms