RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 HOOK3Q86VS8 718 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 CHST13Q8NET6 341 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 FDXACB1Q9BRP7 624 aaPredicted RBP15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 SEMA4AQ9H3S1 761 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 KCNK9Q9NPC2 374 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 BATF3Q9NR55 127 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 STXBP5LQ9Y2K9 1186 aa15.31■□□□□ 0.04
SHROOM1-208ENST00000617339 RWDD2BP57060 319 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 CUL2Q13617 745 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 SLC29A2Q14542 456 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 ACAD10Q6JQN1 1059 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 SAMD3Q8N6K7 520 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 MFSD14AQ96MC6 490 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 ZNF317Q96PQ6 595 aaPredicted RBP15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 SLC12A4Q9UP95 1085 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 ADCY8P40145 1251 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 LACTBP83111 547 aaPredicted RBP15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 RNASELQ05823 741 aaKnown RBP15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 CDO1Q16878 200 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 P3H4Q92791 437 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 L3MBTL3Q96JM7 780 aaPredicted RBP15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 MCEEQ96PE7 176 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 HERPUD2Q9BSE4 406 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 MAP3K20Q9NYL2 800 aaKnown RBP15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 TCP11X1B4DZS4 312 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 H0Y3Z8 333 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 LGR5O75473 907 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 SMNDC1O75940 238 aaKnown RBP eCLIP15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 RALAP11233 206 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 INSRRP14616 1297 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 PCK1P35558 622 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 GPC3P51654 580 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 UBA3Q8TBC4 463 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 MTUS1Q9ULD2 1270 aa15.3■□□□□ 0.04
SHROOM1-208ENST00000617339 SMIM24O75264 130 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 PAEPP09466 180 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 RPL21P46778 160 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 KIZQ2M2Z5 673 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 ANKRD20A2Q5SQ80 823 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 ANKRD20A1Q5TYW2 823 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 ANKRD20A3Q5VUR7 823 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 NUGGCQ68CJ6 796 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 CYP4F22Q6NT55 531 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 DHX33Q9H6R0 707 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 R3HDM2Q9Y2K5 976 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 MAFBQ9Y5Q3 323 aaPredicted RBP15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 MKI67P46013 3256 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 PDHXO00330 501 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 CTNNA2P26232 953 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 TTLL4Q14679 1199 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 C11orf91Q3C1V1 193 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 CDCA2Q69YH5 1023 aaPredicted RBP15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 SLFN11Q7Z7L1 901 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 KCTD17Q8N5Z5 321 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 NSRP1Q9H0G5 558 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 GBA2Q9HCG7 927 aaPredicted RBP15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 IRAK4Q9NWZ3 460 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 TMEM59LQ9UK28 342 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 COL2A1P02458 1487 aaPredicted RBP15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 F8VP50 259 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 PMS2P54278 862 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 TAS2R40P59535 323 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 RBBP5Q15291 538 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 ZACNQ401N2 412 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 GPAT2Q6NUI2 795 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 METTL7BQ6UX53 244 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 ZNF606Q8WXB4 792 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 ERP44Q9BS26 406 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 NTPCRQ9BSD7 190 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 SYT11Q9BT88 431 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 PCDHB2Q9Y5E7 798 aa15.29■□□□□ 0.04
SHROOM1-208ENST00000617339 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 ADCY3O60266 1144 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 ZSCAN5DPP0CG00 497 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 CTCFP49711 727 aaPredicted RBP15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 ATP11AP98196 1134 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 SMAD1Q15797 465 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 ZNF699Q32M78 642 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 RIOX2Q8IUF8 465 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 MCOLN2Q8IZK6 566 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 ATXN2LQ8WWM7 1075 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 C4BPAP04003 597 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 ETS1P14921 441 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 ABL2P42684 1182 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 NAMPTP43490 491 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 CLEC16AQ2KHT3 1053 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 C7orf31Q8N865 590 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 GPRC5AQ8NFJ5 357 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 MRPL4Q9BYD3 311 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 CARD9Q9H257 536 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 SLC5A4Q9NY91 659 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 ADAMTS5Q9UNA0 930 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 LRRD1A4D1F6 860 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 CFAP73A6NFT4 308 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 CCDC188H7C350 402 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 ATP2A2P16615 1042 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 GARTP22102 1010 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 OAZ1P54368 228 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 MXRA7P84157 204 aa15.28■□□□□ 0.04
SHROOM1-208ENST00000617339 CALCOCO2Q13137 446 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms