RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 HEXIM2Q96MH2 286 aaKnown RBP8.29□□□□□ -1.08
NEK3-207ENST00000617054 CELF4Q9BZC1 486 aaKnown RBP8.29□□□□□ -1.08
NEK3-207ENST00000617054 ERVK-5Q9HDB9 667 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 KLHL11Q9NVR0 708 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 ARGLU1Q9NWB6 273 aaPredicted RBP8.29□□□□□ -1.08
NEK3-207ENST00000617054 DAAM1Q9Y4D1 1078 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 GOLGA8SH3BPF8 625 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 KRIT1O00522 736 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 PDGFRBP09619 1106 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 PYGMP11217 842 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 THPOP40225 353 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 GRM5P41594 1212 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 ZNF132P52740 706 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 BPIFB4P59827 614 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 SOX4Q06945 474 aaPredicted RBP8.29□□□□□ -1.08
NEK3-207ENST00000617054 ENPEPQ07075 957 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 MON1BQ7L1V2 547 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 DDX42Q86XP3 938 aaKnown RBP eCLIP8.29□□□□□ -1.08
NEK3-207ENST00000617054 FAM118BQ9BPY3 351 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 MRPL45Q9BRJ2 306 aaKnown RBP8.29□□□□□ -1.08
NEK3-207ENST00000617054 MTG1Q9BT17 334 aaPredicted RBP8.29□□□□□ -1.08
NEK3-207ENST00000617054 ASB7Q9H672 318 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 AGO3Q9H9G7 860 aaKnown RBP8.29□□□□□ -1.08
NEK3-207ENST00000617054 ARFGAP3Q9NP61 516 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 AMACRQ9UHK6 382 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 GTF2IRD1Q9UHL9 959 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 GTF3C4Q9UKN8 822 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 NME7Q9Y5B8 376 aa8.29□□□□□ -1.08
NEK3-207ENST00000617054 ADAMTS4O75173 837 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 VEGFBP49765 207 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 NDST1P52848 882 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 GUCY2DQ02846 1103 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 CENPCQ03188 943 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 MAMLD1Q13495 774 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 UBXN11Q5T124 520 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 FAM182AQ5T1J6 154 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 C8orf74Q6P047 294 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 ZDHHC14Q8IZN3 488 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 SLC4A11Q8NBS3 891 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 SMG8Q8ND04 991 aaKnown RBP8.28□□□□□ -1.08
NEK3-207ENST00000617054 RNPC3Q96LT9 517 aaKnown RBP8.28□□□□□ -1.08
NEK3-207ENST00000617054 KATNAL1Q9BW62 490 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 TRIM31Q9BZY9 425 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 FAM49BQ9NUQ9 324 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 LIMD1Q9UGP4 676 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 ST3GAL5Q9UNP4 418 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 CNTN6Q9UQ52 1028 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 IPPQ9Y573 584 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 RANBP2P49792 3224 aaKnown RBP8.28□□□□□ -1.08
NEK3-207ENST00000617054 SMIM28A0A1B0GU29 152 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 TULP2O00295 520 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 SPTLC1O15269 473 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 RAD51CO43502 376 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 ZRANB2O95218 330 aaKnown RBP eCLIP8.28□□□□□ -1.08
NEK3-207ENST00000617054 YARSP54577 528 aaKnown RBP8.28□□□□□ -1.08
NEK3-207ENST00000617054 BEND6Q5SZJ8 279 aaPredicted RBP8.28□□□□□ -1.08
NEK3-207ENST00000617054 SNX27Q96L92 541 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 SPC25Q9HBM1 224 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 EPB41L5Q9HCM4 733 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 Q9Y3F1 56 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 ZNF236Q9UL36 1845 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 TLR3O15455 904 aaKnown RBP8.28□□□□□ -1.08
NEK3-207ENST00000617054 RRP9O43818 475 aaKnown RBP8.28□□□□□ -1.08
NEK3-207ENST00000617054 ALDH1A1P00352 501 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 GHRP10912 638 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 CRYBB1P53674 252 aaPredicted RBP8.28□□□□□ -1.08
NEK3-207ENST00000617054 PTP4A2Q12974 167 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 PTGISQ16647 500 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 ACOT1Q86TX2 421 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 EMC1Q8N766 993 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 RAET1EQ8TD07 263 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 MCEEQ96PE7 176 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.28□□□□□ -1.083e-10■■■■□ 19.3
NEK3-207ENST00000617054 SELENOOQ9BVL4 669 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 HEMGNQ9BXL5 484 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 DPEP3Q9H4B8 488 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 RAB21Q9UL25 225 aa8.28□□□□□ -1.08
NEK3-207ENST00000617054 F8VP50 259 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 MYO1FO00160 1098 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 RPS6KA5O75582 802 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 GRAP2O75791 330 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 GNAT1P11488 350 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 LMO2P25791 158 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 CD52P31358 61 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 TNNT3P45378 269 aaPredicted RBP8.27□□□□□ -1.09
NEK3-207ENST00000617054 CARSP49589 748 aaKnown RBP8.27□□□□□ -1.09
NEK3-207ENST00000617054 PEX5P50542 639 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 RABGGTBP53611 331 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 TNNC1P63316 161 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 RBP5P82980 135 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 MMGT1Q8N4V1 131 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 CPXM1Q96SM3 734 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 FUT8Q9BYC5 575 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 BCO2Q9BYV7 579 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 CCDC151A5D8V7 595 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 PGRMC1O00264 195 aaKnown RBP8.27□□□□□ -1.09
NEK3-207ENST00000617054 SART1O43290 800 aaKnown RBP8.27□□□□□ -1.09
NEK3-207ENST00000617054 CILPO75339 1184 aa8.27□□□□□ -1.09
NEK3-207ENST00000617054 HEXIM1O94992 359 aaKnown RBP8.27□□□□□ -1.09
NEK3-207ENST00000617054 CYP3A5P20815 502 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms