RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	ZNF720	Q7Z2F6	126 aa		19.01	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ARID3B	Q8IVW6	561 aa	Predicted RBP	19.01	■□□□□ 0.63
SHKBP1-223	ENST00000600552	SAAL1	Q96ER3	474 aa		19.01	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ZFYVE19	Q96K21	471 aa		19.01	■□□□□ 0.63
SHKBP1-223	ENST00000600552	FAM213A	Q9BRX8	229 aa		19.01	■□□□□ 0.63
SHKBP1-223	ENST00000600552	LRRC3	Q9BY71	257 aa		19.01	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ASB7	Q9H672	318 aa		19.01	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ZSCAN32	Q9NX65	697 aa		19.01	■□□□□ 0.63
SHKBP1-223	ENST00000600552	FBXO2	Q9UK22	296 aa	Predicted RBP	19.01	■□□□□ 0.63
SHKBP1-223	ENST00000600552	DERA	Q9Y315	318 aa		19.01	■□□□□ 0.63
SHKBP1-223	ENST00000600552	GCNT3	O95395	438 aa		19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ABCD1	P33897	745 aa		19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	CYP4F8	P98187	520 aa		19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	TFAM	Q00059	246 aa	Known RBP	19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	KCNA1	Q09470	495 aa		19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	FZD5	Q13467	585 aa		19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	VEPH1	Q14D04	833 aa		19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	PTPA	Q15257	358 aa		19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ZNF528	Q3MIS6	628 aa		19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ARHGAP15	Q53QZ3	475 aa		19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	GAREM2	Q75VX8	874 aa		19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ITIH5	Q86UX2	942 aa		19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	SYCP3	Q8IZU3	236 aa		19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ABI2	Q9NYB9	513 aa	Predicted RBP	19	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ANO9	A1A5B4	782 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	GOLGA8IP	A6NC78	632 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	GOLGA8J	A6NMD2	632 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	RPS9	P46781	194 aa	Known RBP	18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	POSTN	Q15063	836 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	LPAL2	Q16609	132 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	EFCAB13	Q8IY85	973 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	SUMF1	Q8NBK3	374 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ZSWIM2	Q8NEG5	633 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	KCNN1	Q92952	543 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	PSMG2	Q969U7	264 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	E2F7	Q96AV8	911 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	RMDN1	Q96DB5	314 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	FAM84A	Q96KN4	292 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	GCNA	Q96QF7	691 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ACCS	Q96QU6	501 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ZCWPW1	Q9H0M4	648 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	SMG9	Q9H0W8	520 aa	Known RBP	18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	TRPV4	Q9HBA0	871 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	STK17A	Q9UEE5	414 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	DSE	Q9UL01	958 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	EXOC7	Q9UPT5	735 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	C2CD2	Q9Y426	696 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ASB3	Q9Y575	518 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	PCDHGA2	Q9Y5H1	932 aa		18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	SRPRB	Q9Y5M8	271 aa	Known RBP	18.99	■□□□□ 0.63
SHKBP1-223	ENST00000600552	SYT1	P21579	422 aa		18.98	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ADSS	P30520	456 aa		18.98	■□□□□ 0.63
SHKBP1-223	ENST00000600552	STAT6	P42226	847 aa		18.98	■□□□□ 0.63
SHKBP1-223	ENST00000600552	TUFM	P49411	452 aa	Known RBP	18.98	■□□□□ 0.63
SHKBP1-223	ENST00000600552	REST	Q13127	1097 aa		18.98	■□□□□ 0.63
SHKBP1-223	ENST00000600552	CUL4A	Q13619	759 aa		18.98	■□□□□ 0.63
SHKBP1-223	ENST00000600552	CRELD2	Q6UXH1	353 aa	Predicted RBP	18.98	■□□□□ 0.63
SHKBP1-223	ENST00000600552	LRRTM3	Q86VH5	581 aa		18.98	■□□□□ 0.63
SHKBP1-223	ENST00000600552	PDILT	Q8N807	584 aa		18.98	■□□□□ 0.63
SHKBP1-223	ENST00000600552	PCIF1	Q9H4Z3	704 aa		18.98	■□□□□ 0.63
SHKBP1-223	ENST00000600552	RBM12	Q9NTZ6	932 aa	Known RBP	18.98	■□□□□ 0.63
SHKBP1-223	ENST00000600552	AGAP1	Q9UPQ3	857 aa		18.98	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ZNF292	O60281	2723 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	KPNA7	A9QM74	516 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	IL18RAP	O95256	599 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	CYP11A1	P05108	521 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	GAP43	P17677	238 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	PAX3	P23760	479 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	SV2C	Q496J9	727 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	STKLD1	Q8NE28	680 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	TTC16	Q8NEE8	873 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	HVCN1	Q96D96	273 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	LRRC3B	Q96PB8	259 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	CHRD	Q9H2X0	955 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ST6GALNAC4	Q9H4F1	302 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	MAGED2	Q9UNF1	606 aa	Predicted RBP	18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	SMG5	Q9UPR3	1016 aa	Known RBP	18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	STYXL1	Q9Y6J8	313 aa		18.97	■□□□□ 0.63
SHKBP1-223	ENST00000600552	OTOGL	Q3ZCN5	2332 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	GPR179	Q6PRD1	2367 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	CHAD	O15335	359 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	FGF19	O95750	216 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	KRT19	P08727	400 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	ATF6	P18850	670 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	POLR2B	P30876	1174 aa	Known RBP	18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	CASP5	P51878	434 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	WNT7B	P56706	349 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	FOXK2	Q01167	660 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	BFSP1	Q12934	665 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	L1TD1	Q5T7N2	865 aa	Known RBP	18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	SDHAF4	Q5VUM1	108 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	CCDC73	Q6ZRK6	1079 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	DCP1B	Q8IZD4	617 aa	Known RBP	18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	DNAJC19	Q96DA6	116 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	USP28	Q96RU2	1077 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	PI4K2A	Q9BTU6	479 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	TRPV5	Q9NQA5	729 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	PRMT8	Q9NR22	394 aa	Predicted RBP	18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	PANK4	Q9NVE7	773 aa		18.96	■□□□□ 0.63
SHKBP1-223	ENST00000600552	GTSE1	Q9NYZ3	720 aa		18.96	■□□□□ 0.63

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms