RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CGNQ9P2M7 1197 aaKnown RBP13.69□□□□□ -0.22
UPF1-208ENST00000600012 ANKFY1Q9P2R3 1169 aa13.69□□□□□ -0.22
UPF1-208ENST00000600012 CACNG4Q9UBN1 327 aa13.69□□□□□ -0.22
UPF1-208ENST00000600012 CITO14578 2027 aa13.69□□□□□ -0.22
UPF1-208ENST00000600012 PTGESO14684 152 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 SLC16A3O15427 465 aaKnown RBP13.68□□□□□ -0.22
UPF1-208ENST00000600012 TEX33O43247 280 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 RECQL4O94761 1208 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 KIF4AO95239 1232 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 GNA14O95837 355 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 EPB41P11171 864 aaKnown RBP13.68□□□□□ -0.22
UPF1-208ENST00000600012 HARSP12081 509 aaKnown RBP13.68□□□□□ -0.22
UPF1-208ENST00000600012 CDC25BP30305 580 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 HOXA9P31269 272 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 MATR3P43243 847 aaKnown RBP eCLIP13.68□□□□□ -0.22
UPF1-208ENST00000600012 MARSP56192 900 aaKnown RBP13.68□□□□□ -0.22
UPF1-208ENST00000600012 SNRPFP62306 86 aaKnown RBP13.68□□□□□ -0.22
UPF1-208ENST00000600012 FILIP1LQ4L180 1135 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 PPM1LQ5SGD2 360 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 CEP57Q86XR8 500 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 FAM186BQ8IYM0 893 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 XXYLT1Q8NBI6 393 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 SPC24Q8NBT2 197 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 LNX1Q8TBB1 728 aaPredicted RBP13.68□□□□□ -0.22
UPF1-208ENST00000600012 PDLIM2Q96JY6 352 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 CLSTN3Q9BQT9 956 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 HAPLN2Q9GZV7 340 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 RTN4Q9NQC3 1192 aaKnown RBP13.68□□□□□ -0.22
UPF1-208ENST00000600012 SNTG2Q9NY99 539 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 NUMBLQ9Y6R0 609 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 CACNA1IQ9P0X4 2223 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 VPS13AQ96RL7 3174 aa13.68□□□□□ -0.22
UPF1-208ENST00000600012 LGALS16A8MUM7 142 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 PES1O00541 588 aaKnown RBP13.67□□□□□ -0.22
UPF1-208ENST00000600012 ACKR2O00590 384 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 XYLBO75191 536 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 C8AP07357 584 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 ADRB2P07550 413 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 GARTP22102 1010 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 PSMC2P35998 433 aaKnown RBP13.67□□□□□ -0.22
UPF1-208ENST00000600012 MYBPC2Q14324 1141 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 NR1I3Q14994 352 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 NAB2Q15742 525 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 MAN2A1Q16706 1144 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 MIIPQ5JXC2 388 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 EEF1DP3Q658K8 133 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 DCLRE1AQ6PJP8 1040 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 ZPBP2Q6X784 338 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.67□□□□□ -0.22
UPF1-208ENST00000600012 GRASPQ7Z6J2 395 aaPredicted RBP13.67□□□□□ -0.22
UPF1-208ENST00000600012 TRIM59Q8IWR1 403 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 DRC7Q8IY82 874 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 RDH13Q8NBN7 331 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 PPP1R9BQ96SB3 815 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 ACO2Q99798 780 aaKnown RBP13.67□□□□□ -0.22
UPF1-208ENST00000600012 MKNK1Q9BUB5 465 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 ARMCX3Q9UH62 379 aaPredicted RBP13.67□□□□□ -0.22
UPF1-208ENST00000600012 CDH7Q9ULB5 785 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 FRMD4BQ9Y2L6 1034 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 SIT1Q9Y3P8 196 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 STYXL1Q9Y6J8 313 aa13.67□□□□□ -0.22
UPF1-208ENST00000600012 NOTCH4Q99466 2003 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 LRRC10BA6NIK2 292 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 TPM3P06753 285 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 TPM2P07951 284 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 POU2F2P09086 479 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 DCAF4L1Q3SXM0 396 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 VWA3BQ502W6 1294 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 DCAF17Q5H9S7 520 aaPredicted RBP13.66□□□□□ -0.22
UPF1-208ENST00000600012 ATF7IP2Q5U623 682 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 MTSS1LQ765P7 747 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 ERMP1Q7Z2K6 904 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 TMC6Q7Z403 805 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.66□□□□□ -0.22
UPF1-208ENST00000600012 CBWD2Q8IUF1 395 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 GPD1LQ8N335 351 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 TMEM174Q8WUU8 243 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 FGF14Q92915 247 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 BORCS6Q96GS4 357 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 SHDQ96IW2 340 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 DLGAP2Q9P1A6 1054 aa13.66□□□□□ -0.22
UPF1-208ENST00000600012 AGO2Q9UKV8 859 aaKnown RBP13.66□□□□□ -0.22
UPF1-208ENST00000600012 PDCD11Q14690 1871 aaKnown RBP13.65□□□□□ -0.22
UPF1-208ENST00000600012 TMEM189-UBE2V1I3L0A0 370 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 ABLIM1O14639 778 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 CCL16O15467 120 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 TOM1L1O75674 476 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 LMNAP02545 664 aaKnown RBP13.65□□□□□ -0.22
UPF1-208ENST00000600012 DCNP07585 359 aaKnown RBP13.65□□□□□ -0.22
UPF1-208ENST00000600012 TRIM49P0CI25 452 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 TRIM49CP0CI26 452 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 FGFR3P22607 806 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 ID4P47928 161 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 STARD6P59095 220 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 NTHL1P78549 312 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 UBXN1Q04323 297 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 RAB33AQ14088 237 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 ZNF568Q3ZCX4 644 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 ZBTB41Q5SVQ8 909 aa13.65□□□□□ -0.22
UPF1-208ENST00000600012 TCERG1LQ5VWI1 586 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms