RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 VRTNQ9H8Y1 702 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 TMEM8AQ9HCN3 771 aa15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 NXF1Q9UBU9 619 aaKnown RBP15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 ARMCX3Q9UH62 379 aaPredicted RBP15.26■□□□□ 0.03
SHKBP1-217ENST00000598558 CCDC195A0A1B0GUA6 201 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 FSD2A1L4K1 749 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 HUS1O60921 280 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 ATP2C2O75185 946 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 ZMYND10O75800 440 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 PAPLNO95428 1278 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 HOXB8P17481 243 aaPredicted RBP15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 ACAT1P24752 427 aaKnown RBP15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 ATICP31939 592 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 SMAD4Q13485 552 aaKnown RBP15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 CAVIN1Q6NZI2 390 aaKnown RBP15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 C11orf57Q6ZUT1 292 aaPredicted RBP15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 FRMD5Q7Z6J6 570 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 TTC9BQ8N6N2 239 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 TOP6BLQ8N6T0 577 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 ATAD1Q8NBU5 361 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 HDAC7Q8WUI4 952 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 NECAB3Q96P71 396 aaPredicted RBP15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 PGLYRP2Q96PD5 576 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 PKMYT1Q99640 499 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 PLEKHA4Q9H4M7 779 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 SMYD3Q9H7B4 428 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 DZANK1Q9NVP4 752 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 DSEQ9UL01 958 aa15.25■□□□□ 0.03
SHKBP1-217ENST00000598558 OR6C75A6NL08 312 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 ASS1P00966 412 aaKnown RBP15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 C8AP07357 584 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 ATF2P15336 505 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 GTF2H1P32780 548 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 RAP1GAPP47736 663 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 ADCY1Q08828 1119 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 GPR17Q13304 367 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 SMAD2Q15796 467 aaKnown RBP15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 CCDC40Q4G0X9 1142 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 DCAF17Q5H9S7 520 aaPredicted RBP15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 TCERG1LQ5VWI1 586 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 DPH6Q7L8W6 267 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 GPR149Q86SP6 731 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 METTL23Q86XA0 190 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 TRIM59Q8IWR1 403 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 ADGRF2Q8IZF7 708 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 SLC7A14Q8TBB6 771 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 MMS19Q96T76 1030 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 DDX43Q9NXZ2 648 aaKnown RBP15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 AFF4Q9UHB7 1163 aaKnown RBP15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 BRWD1Q9NSI6 2320 aa15.24■□□□□ 0.03
SHKBP1-217ENST00000598558 PLXNA3P51805 1871 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 MYBPHLA2RUH7 354 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 MTMR11A4FU01 709 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 SOAT2O75908 522 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 PDGFRBP09619 1106 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 CPB1P15086 417 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 WARSP23381 471 aaKnown RBP15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 ERCC5P28715 1186 aaPredicted RBP15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 PIK3CAP42336 1068 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 MARSP56192 900 aaKnown RBP15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 AAK1Q2M2I8 961 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 SGSM1Q2NKQ1 1148 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 ZNF699Q32M78 642 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 TJAP1Q5JTD0 557 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 TPGS2Q68CL5 300 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 KRT39Q6A163 491 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 TCEAL8Q8IYN2 117 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 TMEM86AQ8N2M4 240 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 CMASQ8NFW8 434 aaPredicted RBP15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 TATDN2Q93075 761 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 SYAP1Q96A49 352 aaPredicted RBP15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 POMKQ9H5K3 350 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 SFXN1Q9H9B4 322 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 METTL14Q9HCE5 456 aaKnown RBP15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 CD320Q9NPF0 282 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 SLC27A5Q9Y2P5 690 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 COQ4Q9Y3A0 265 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 R3HCC1Q9Y3T6 440 aaKnown RBP15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 UNC80Q8N2C7 3258 aa15.23■□□□□ 0.03
SHKBP1-217ENST00000598558 NRG2O14511 850 aaPredicted RBP15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 CCL16O15467 120 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 TACC1O75410 805 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 SRGAP2BP0DMP2 458 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 ASPAP45381 313 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 MXI1P50539 228 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 NTHL1P78549 312 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 ITIH3Q06033 890 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 DUSP4Q13115 394 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 KLHL40Q2TBA0 621 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 SLC39A12Q504Y0 691 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 HSP90AA4PQ58FG1 418 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 ZNF667Q5HYK9 610 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 SCARA5Q6ZMJ2 495 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 THEM5Q8N1Q8 247 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 LMO3Q8TAP4 145 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 CNOT6LQ96LI5 555 aaKnown RBP15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 ACBD6Q9BR61 282 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 PRKD2Q9BZL6 878 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 DPEP3Q9H4B8 488 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 CYP4F11Q9HBI6 524 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms