RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TNNI1P19237 187 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 NR2F2P24468 414 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 PRCPP42785 496 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 AP3M2P53677 418 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 ARPP19P56211 112 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 BFSP1Q12934 665 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 PTPN21Q16825 1174 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 C1orf220Q5T0J3 134 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 CENPPQ6IPU0 288 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 DPH6Q7L8W6 267 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 GRASPQ7Z6J2 395 aaPredicted RBP17.35■□□□□ 0.37
TRIM28-213ENST00000598355 ERCC4Q92889 916 aaPredicted RBP17.35■□□□□ 0.37
TRIM28-213ENST00000598355 SMARCE1Q969G3 411 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 ACSF2Q96CM8 615 aaPredicted RBP17.35■□□□□ 0.37
TRIM28-213ENST00000598355 HPDLQ96IR7 371 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 MYADMQ96S97 322 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 PKMYT1Q99640 499 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 XYLT2Q9H1B5 865 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 PIDD1Q9HB75 910 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 CYP4F11Q9HBI6 524 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 TSHZ2Q9NRE2 1034 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 DNMT3BQ9UBC3 853 aaKnown RBP17.35■□□□□ 0.37
TRIM28-213ENST00000598355 YIPF1Q9Y548 306 aa17.35■□□□□ 0.37
TRIM28-213ENST00000598355 PRRG1O14668 218 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 AKAP3O75969 853 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 CST3P01034 146 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-213ENST00000598355 C4BPAP04003 597 aaKnown RBP17.34■□□□□ 0.37
TRIM28-213ENST00000598355 KRT19P08727 400 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 ELF1P32519 619 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 EPHA5P54756 1037 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 SMARCB1Q12824 385 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 MYO1EQ12965 1108 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 SOWAHAQ2M3V2 549 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 TDRD10Q5VZ19 366 aaKnown RBP17.34■□□□□ 0.37
TRIM28-213ENST00000598355 METTL23Q86XA0 190 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 KBTBD7Q8WVZ9 684 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 MKNK1Q9BUB5 465 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 C1QTNF1Q9BXJ1 281 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 HCFC1R1Q9NWW0 138 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.34■□□□□ 0.37
TRIM28-213ENST00000598355 SNX9Q9Y5X1 595 aa17.34■□□□□ 0.37
TRIM28-213ENST00000598355 IKBKBO14920 756 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 GPR37L1O60883 481 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 HUS1O60921 280 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 LRG1P02750 347 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 DLG4P78352 724 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 NTHL1P78549 312 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 ZACNQ401N2 412 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 PRSS36Q5K4E3 855 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 LRRTM3Q86VH5 581 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 OSTM1Q86WC4 334 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 ADGRF2Q8IZF7 708 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 ADSSL1Q8N142 457 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 THEM5Q8N1Q8 247 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 TTC9BQ8N6N2 239 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 C2orf15Q8WU43 125 aaKnown RBP17.33■□□□□ 0.36
TRIM28-213ENST00000598355 ACBD6Q9BR61 282 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 DNAJC25Q9H1X3 360 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 CEP72Q9P209 647 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 MAN1B1Q9UKM7 699 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 SORCS3Q9UPU3 1222 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 FRMD4BQ9Y2L6 1034 aa17.33■□□□□ 0.36
TRIM28-213ENST00000598355 ZFP37Q9Y6Q3 630 aaPredicted RBP17.33■□□□□ 0.36
TRIM28-213ENST00000598355 ZNF638Q14966 1978 aaKnown RBP17.33■□□□□ 0.36
TRIM28-213ENST00000598355 VNN1O95497 513 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 RHOP08100 348 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 FAM163BP0C2L3 166 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 BMP6P22004 513 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 FSHRP23945 695 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 RPL13P26373 211 aaKnown RBP17.32■□□□□ 0.36
TRIM28-213ENST00000598355 ATICP31939 592 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 ZXDAP98168 799 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 SLC5A9Q2M3M2 681 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 PABPC1LQ4VXU2 614 aaKnown RBP17.32■□□□□ 0.36
TRIM28-213ENST00000598355 CEP135Q66GS9 1140 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 FOXR2Q6PJQ5 311 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 INTS8Q75QN2 995 aaKnown RBP17.32■□□□□ 0.36
TRIM28-213ENST00000598355 GET4Q7L5D6 327 aaPredicted RBP17.32■□□□□ 0.36
TRIM28-213ENST00000598355 ATAD1Q8NBU5 361 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 SPPL2BQ8TCT7 592 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 EDAQ92838 391 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 PGLYRP2Q96PD5 576 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 KMT2EQ8IZD2 1858 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 KIF26AQ9ULI4 1882 aaPredicted RBP17.32■□□□□ 0.36
TRIM28-213ENST00000598355 ZDBF2Q9HCK1 2354 aa17.32■□□□□ 0.36
TRIM28-213ENST00000598355 ANAPC1Q9H1A4 1944 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 ANHXE9PGG2 379 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 TACC1O75410 805 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 MICAL2O94851 1124 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 LAMP2P13473 410 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 WARSP23381 471 aaKnown RBP17.31■□□□□ 0.36
TRIM28-213ENST00000598355 LHX1P48742 406 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 PMS1P54277 932 aaKnown RBP17.31■□□□□ 0.36
TRIM28-213ENST00000598355 MYL6P60660 151 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 LRRC63Q05C16 580 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 TWF1Q12792 350 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 DUSP4Q13115 394 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 PLD1Q13393 1074 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 MORC3Q14149 939 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 SLC39A12Q504Y0 691 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms